View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15905_low_5 (Length: 386)
Name: NF15905_low_5
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15905_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 43258816 - 43258446
Alignment:
| Q |
1 |
caaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaaatattcag |
100 |
Q |
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| T |
43258816 |
caaccaccttttcttcactttcttgtcttagcatcttgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaaatattcag |
43258717 |
T |
|
| Q |
101 |
catctttgtgtgttaacttctttgttgcaatttaatcaacttttaatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgatt |
200 |
Q |
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| T |
43258716 |
catctttgtgtgttaacttctttgttgcaatttaatcaacttttaatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgatt |
43258617 |
T |
|
| Q |
201 |
ggaaaatgaatcatatttgggagtatactcaacatttgtcaatgctttcgaaataaataaagataaaaactccattttacttggcatatcttttattttg |
300 |
Q |
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| T |
43258616 |
ggaaaatgaatcatatttgcgagtatactcaacatttgtcaatgctttcgaaataaataaagat-aaaactccattttacttggcatatcttttattttg |
43258518 |
T |
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| Q |
301 |
aattggnnnnnnnttaatgcaagtcatggtgnnnnnnnnaaagtaatgtgatatatctagaaggaatttatc |
372 |
Q |
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| T |
43258517 |
aattggaaaaaaattaatgcaagtcatggtgttttttttaaagtaatgttatatatctagaaggaatttatc |
43258446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 43255550 - 43255422
Alignment:
| Q |
1 |
caaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaaatattcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43255550 |
caaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaataattcag |
43255451 |
T |
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| Q |
101 |
catctttgtgtgttaacttctttgttgca |
129 |
Q |
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| T |
43255450 |
catctttgtgtgttaacttctttgttgca |
43255422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 43254421 - 43254302
Alignment:
| Q |
142 |
tttaatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcatatttgggagtatactcaacatttgtca |
241 |
Q |
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| T |
43254421 |
tttaatgtagtgaaaattaaaattaattcttaacaaacatctagtgtataagtttgtttggaaaatgaatcatatttgtgagtatactcaacatttgtca |
43254322 |
T |
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| Q |
242 |
atgctttcgaaataaataaa |
261 |
Q |
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|||||||||||||||||||| |
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| T |
43254321 |
atgctttcgaaataaataaa |
43254302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 123 - 261
Target Start/End: Complemental strand, 43225951 - 43225808
Alignment:
| Q |
123 |
tgttgcaatttaatcaactttt-aatgtagtgaaaa--ttaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcatatttg |
219 |
Q |
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|||||||||||||||||||||| ||| ||||||||| ||||||| ||||||| ||||| |||||||||||| ||||||||| |||||||||||||||| |
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| T |
43225951 |
tgttgcaatttaatcaacttttcaatatagtgaaaaaattaaaatcaattcttgacaaatatttagtgtata-gtttgattgataaatgaatcatatttg |
43225853 |
T |
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| Q |
220 |
ggagtat---actcaacatttgtcaatgctttcgaaataaataaa |
261 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| |
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| T |
43225852 |
tgagtatgcaactcaacatttgtcaatgctatcgaaataaataaa |
43225808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 43230041 - 43229918
Alignment:
| Q |
123 |
tgttgcaatttaatcaacttttaatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcatatttggga |
222 |
Q |
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| T |
43230041 |
tgttgcaatttaatcaacttttaatg-agtgaagattaaaatggattcttaa---acatttaggatata-gtttgattggaaaatgaatcatatttatga |
43229947 |
T |
|
| Q |
223 |
gtat---actcaacatttgtcaatgcttt |
248 |
Q |
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|||| ||||||||||||||||| |||| |
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| T |
43229946 |
gtatgcaactcaacatttgtcaatacttt |
43229918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 43226066 - 43226006
Alignment:
| Q |
67 |
agaaatgacatttacaagaactagaaatattcagcatctttgtgtgttaacttctttgttgca |
129 |
Q |
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| T |
43226066 |
agaaatgacatgtacaagaactagaaatattcggtatc--tgtgtgttaacttctttgttgca |
43226006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 43246819 - 43246733
Alignment:
| Q |
123 |
tgttgcaatttaatcaacttttaatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcat |
214 |
Q |
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|||| |||||||||||| |||||||| |||||| |||||| || |||||||| |||||||||||||| ||||||||| |||||||||||| |
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| T |
43246819 |
tgttacaatttaatcaatttttaatg-agtgaagattaaactggattcttaa---acatttagtgtata-gtttgattgaaaaatgaatcat |
43246733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 43253284 - 43253198
Alignment:
| Q |
123 |
tgttgcaatttaatcaacttttaatgtagtgaaaattaaaatgaattcttaacaaacatttagtgtataagtttgattggaaaatgaatcat |
214 |
Q |
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|||| |||||||||||| |||||||| |||||| |||||| || |||||||| |||||||||||||| ||||||||| |||||||||||| |
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| T |
43253284 |
tgttacaatttaatcaatttttaatg-agtgaagattaaactggattcttaa---acatttagtgtata-gtttgattgaaaaatgaatcat |
43253198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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