View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15905_low_6 (Length: 331)

Name: NF15905_low_6
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15905_low_6
NF15905_low_6
[»] chr5 (8 HSPs)
chr5 (13-314)||(4100391-4100690)
chr5 (62-209)||(4146462-4146609)
chr5 (226-314)||(4106063-4106151)
chr5 (222-314)||(4129249-4129341)
chr5 (87-164)||(2326360-2326437)
chr5 (92-209)||(39576313-39576430)
chr5 (87-151)||(39572365-39572429)
chr5 (90-206)||(225307-225422)
[»] chr8 (3 HSPs)
chr8 (87-209)||(9841939-9842058)
chr8 (87-160)||(27360973-27361046)
chr8 (87-165)||(9860620-9860699)
[»] scaffold0658 (1 HSPs)
scaffold0658 (87-160)||(2851-2924)
[»] chr1 (3 HSPs)
chr1 (87-168)||(5054214-5054295)
chr1 (87-208)||(46445947-46446068)
chr1 (87-208)||(46672099-46672220)
[»] chr3 (2 HSPs)
chr3 (87-154)||(7256841-7256908)
chr3 (13-54)||(16243171-16243212)
[»] chr6 (1 HSPs)
chr6 (87-142)||(112639-112694)
[»] chr4 (1 HSPs)
chr4 (13-50)||(19819959-19819996)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 4100391 - 4100690
Alignment:
Q  13 aatatcacaaaaagactttaaaaatagcgaataactgattgtaaaatgcatcttatggccccaatcaatcgcaaaatcaaaaggtcccatctcataataa 112  Q
    ||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  4100391 aatatcataaaaagactctaaaa-tagcgaataactgactgtaaaatgcatcttatggccc-aagcaatcgcaaaatcaaaaggtcccatctcatgataa 4100488  T
Q  113 agagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactatgcaagaaagatgatttcccatcctta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4100489 agagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactatgcaagaaagatgatttcccatcctta 4100588  T
Q  213 ttttaatgatgggaggttccaactttattttaatgatgatgatcataatctaatgctaagtccacttgcatggcctactcaatttcgttacaatttttac 312  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  4100589 ttttaatgatgggaggttccaactttattttaatgatgatgaccataatctaatgttaagtccacttgcatggcctgctcaatttcgttacaatttttac 4100688  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 4146609 - 4146462
Alignment:
Q  62 atcttatggccccaatcaatcgcaaaatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttc 161  Q
    |||| |||||| ||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  4146609 atctcatggccgcaagcagtcggaaaatcaaaaggtcccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgttc 4146510  T
Q  162 tataaaatgcatcattattcactatgcaagaaagatgatttcccatcc 209  Q
    || ||||||||||||||||||| ||||||||||| |||||||||||||    
T  4146509 tacaaaatgcatcattattcacaatgcaagaaaggtgatttcccatcc 4146462  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 4106063 - 4106151
Alignment:
Q  226 aggttccaactttattttaatgatgatgatcataatctaatgctaagtccacttgcatggcctactcaatttcgttacaatttttacta 314  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4106063 aggttccaactttattttaatgatgatgatcataatctaatgttaagtccacttgcatggcctactcaatttcgttacaatttttacta 4106151  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 4129249 - 4129341
Alignment:
Q  222 tgggaggttccaactttattttaatgatgatgatcataatctaatgctaagtccacttgcatggcctactcaatttcgttacaatttttacta 314  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  4129249 tgggaggttccaactttattttcgtgatgatgatcataatctcatgttaagtccacttgcatggcctactcaattacgttacaaattttacta 4129341  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 2326360 - 2326437
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctat 164  Q
    ||||||| ||||||||||||| |||||||||| |||||||| | ||||||| ||||||||||||||||||||||||||    
T  2326360 aatcaaatggtcccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttgaaatgttctat 2326437  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 209
Target Start/End: Complemental strand, 39576430 - 39576313
Alignment:
Q  92 aaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctat-aaaatgcatcattattcactatgcaa 190  Q
    |||||||||||||||| |||||||||||||| |||| | |||||||||||| ||||||||||| || || | | |||||| ||| |||| ||| ||||||    
T  39576430 aaaggtcccatctcatgataaagagaccattctcctgaatcaaaatccaaagtgtagatttgatatcttttctgaaaatg-atctttatacacaatgcaa 39576332  T
Q  191 gaaagatgatttcccatcc 209  Q
    ||||||  |||||||||||    
T  39576331 gaaagacaatttcccatcc 39576313  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 39572429 - 39572365
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatt 151  Q
    ||||||||||||||||||||| |||| |||||||||||| | | |||||||||||||||||||||    
T  39572429 aatcaaaaggtcccatctcatgataaggagaccattttcttgaatcaaaatccaaaatgtagatt 39572365  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 225422 - 225307
Alignment:
Q  90 caaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactatgca 189  Q
    |||||||||  ||||||| ||||||||||||||||| |   |||||||| || |||||||| | |||| || ||||| | ||||| |||  ||| |||||    
T  225422 caaaaggtcagatctcatgataaagagaccattttcttgcatcaaaatctaacatgtagatatcaaatctt-tataataagcatctttacacacaatgca 225324  T
Q  190 agaaagatgatttccca 206  Q
    |||||||  ||||||||    
T  225323 agaaagaaaatttccca 225307  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 209
Target Start/End: Complemental strand, 9842058 - 9841939
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactat 186  Q
    ||||||||||||||||||||| || |||||||||||||||| | |||||||||| ||||||||||||| |||| ||||||   | ||| ||| || | ||    
T  9842058 aatcaaaaggtcccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtactataa---gtatctttagtcgcaat 9841962  T
Q  187 gcaagaaagatgatttcccatcc 209  Q
    |||||||||  ||||||||||||    
T  9841961 gcaagaaaggcgatttcccatcc 9841939  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 27361046 - 27360973
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgtt 160  Q
    ||||||||||||||||||||| |||||||  |||||||||||| |||||||||||| | ||||||||| |||||    
T  27361046 aatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 27360973  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 9860699 - 9860620
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtaga-tttgaaatgttctata 165  Q
    ||||||||||||||||||||| ||||||||||||||||||| | |||  |||||||||| | | ||||| ||||||||||    
T  9860699 aatcaaaaggtcccatctcatgataaagagaccattttcctgaatcatgatccaaaatgaatattttgatatgttctata 9860620  T

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Target: scaffold0658 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 2851 - 2924
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgtt 160  Q
    ||||||||||||||||||||| |||||||  |||||||||||| |||||||||||| | ||||||||| |||||    
T  2851 aatcaaaaggtcccatctcatgataaagattccattttcctaaatcaaaatccaaagtatagatttgatatgtt 2924  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 5054214 - 5054295
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaa 168  Q
    ||||||||||||||||||||| |||| |||||||||||||    |||||||||||||| ||||| ||||||||| |||||||    
T  5054214 aatcaaaaggtcccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagatctgaaatgttgtataaaa 5054295  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 46446068 - 46445947
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactat 186  Q
    |||||||| |||||||||||| ||||||||||||||  ||  | |||||||||||||||||||||||| ||| |  ||||| | |||| ||||   | ||    
T  46446068 aatcaaaatgtcccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagatttgatatgcttcataaatttcatctttatatgcaat 46445969  T
Q  187 gcaagaaagatgatttcccatc 208  Q
    |||||||||||||| |||||||    
T  46445968 gcaagaaagatgatctcccatc 46445947  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 46672099 - 46672220
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaatgcatcattattcactat 186  Q
    |||||||| |||||||| ||| ||| ||||||||||||||| | |||||||||||||||||||||||| ||| |  || || |  ||| || | ||| ||    
T  46672099 aatcaaaatgtcccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagatttgatatgcttcattaattttatctttgtacacaat 46672198  T
Q  187 gcaagaaagatgatttcccatc 208  Q
    ||||||||| ||||||||||||    
T  46672199 gcaagaaaggtgatttcccatc 46672220  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 7256908 - 7256841
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaaatgtagatttga 154  Q
    |||||||||||||||||  || ||||||||||||||||| | | |||||||| |||||||||||||||    
T  7256908 aatcaaaaggtcccatcatatgataaagagaccattttcttgaatcaaaatctaaaatgtagatttga 7256841  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 16243212 - 16243171
Alignment:
Q  13 aatatcacaaaaagactttaaaaatagcgaataactgattgt 54  Q
    ||||||| ||||||||| |||||||||||||| |||||||||    
T  16243212 aatatcataaaaagactctaaaaatagcgaatgactgattgt 16243171  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 112639 - 112694
Alignment:
Q  87 aatcaaaaggtcccatctcataataaagagaccattttcctaactcaaaatccaaa 142  Q
    |||||||||| |||||||||| |||||||| |||||||||||| || |||||||||    
T  112639 aatcaaaaggccccatctcatgataaagagtccattttcctaaatccaaatccaaa 112694  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 19819996 - 19819959
Alignment:
Q  13 aatatcacaaaaagactttaaaaatagcgaataactga 50  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  19819996 aatatcataaaaagactttaaaaatagcgaatgactga 19819959  T

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