View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15905_low_7 (Length: 295)
Name: NF15905_low_7
Description: NF15905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15905_low_7 |
 | |
|
| [»] scaffold0073 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 6986731 - 6986993
Alignment:
| Q |
12 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6986731 |
gagatgaagaaattcaagaaaattttggtatcgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
6986830 |
T |
|
| Q |
112 |
ttttgattcgcagttttcgctgttccttcttatgttgtctacctgcctggttgtttaattgatgtttcttctaaatgggattttccaagcagatggcaac |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6986831 |
ttttgattcacagttttcgctgttccttctgatgttgtctacctgcctggttgttaaattgatgtttcttctaaatgggattttccaagcagatggcaac |
6986930 |
T |
|
| Q |
212 |
ctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgcttg |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6986931 |
ctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgacgtgcttg |
6986993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 7045429 - 7045540
Alignment:
| Q |
12 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7045429 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttgacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatggt |
7045528 |
T |
|
| Q |
112 |
ttttgattcgca |
123 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
7045529 |
ttttcattcgca |
7045540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 7045552 - 7045663
Alignment:
| Q |
163 |
tgtttaattgatgtttcttctaaatgggattttccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaagg |
262 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
7045552 |
tgttaaattgatgtttcttctaaatgggattttccaagcagatggcaacctgatcctgtggaagccgatccatcgaagggaagcagacaccaaaggaagg |
7045651 |
T |
|
| Q |
263 |
ttgacgtgcttg |
274 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7045652 |
ttgacgtgcttg |
7045663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 31898790 - 31898535
Alignment:
| Q |
12 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31898790 |
gagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttataatatgga |
31898691 |
T |
|
| Q |
112 |
ttttgattcgcagttttcgctgttccttcttatgttgtctacctgcctggttgtttaattgatgtttcttctaaatgggattttccaagcagatggcaac |
211 |
Q |
| |
|
|||||||||||||||||| | |||| |||| || | |||| ||||| |||| | |||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
31898690 |
ttttgattcgcagttttcaccgttctttctgatttggtctgcctgctaggttatgaaattgatgtttcttctcaatgggcttttccaaacagatggcaac |
31898591 |
T |
|
| Q |
212 |
ctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgac |
267 |
Q |
| |
|
||||||| || ||||| || |||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
31898590 |
ctgatcctgtagaagcagatccattgaagggaagcagaaaccaaagaaaggttgac |
31898535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 31962588 - 31962333
Alignment:
| Q |
12 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31962588 |
gagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatattatgga |
31962489 |
T |
|
| Q |
112 |
ttttgattcgcagttttcgctgttccttcttatgttgtctacctgcctggttgtttaattgatgtttcttctaaatgggattttccaagcagatggcaac |
211 |
Q |
| |
|
|||||||||||||||||| | ||| |||| || | |||| ||||| |||| | |||||||||||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
31962488 |
ttttgattcgcagttttcacctttctttctgatttggtctgcctgctaggttatgaaattgatgtttcttcttaatggggttttccaaacagatggcaac |
31962389 |
T |
|
| Q |
212 |
ctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaaggttgac |
267 |
Q |
| |
|
||||||| || ||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31962388 |
ctgatcctgtagaagcagatccattgaagggaagcagaaaccaaaggaaggttgac |
31962333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 14262 - 14373
Alignment:
| Q |
12 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14262 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttgacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatggt |
14361 |
T |
|
| Q |
112 |
ttttgattcgca |
123 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
14362 |
ttttcattcgca |
14373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 14385 - 14496
Alignment:
| Q |
163 |
tgtttaattgatgtttcttctaaatgggattttccaagcagatggcaacctgatcccgtggaagccgacccatcgaagggaagcagaaaccaaaggaagg |
262 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
14385 |
tgttaaattgatgtttcttctaaatgggattttccaagcagatggcaacctgatcctgtggaagccgatccatcgaagggaagcagacaccaaaggaagg |
14484 |
T |
|
| Q |
263 |
ttgacgtgcttg |
274 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14485 |
ttgacgtgcttg |
14496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University