View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_11 (Length: 459)
Name: NF15906_high_11
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 7 - 459
Target Start/End: Original strand, 6207878 - 6208328
Alignment:
| Q |
7 |
atgtcgaagaatatgcagcaatcagaaaatttatcattcgtgtctttatatacattgtcgtcaattgagtagtcaaaacattaagattatttatatttta |
106 |
Q |
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| T |
6207878 |
atgtggaagaatatgcagcaatcagaaaatttatcattcgtgtctttatatacattgtcgtcaattgagtaatcaaaatattaagattatttatatttta |
6207977 |
T |
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| Q |
107 |
tggtgaaaactctatttattagtcacaatataattttaagtatgtttttgggaccaattctatggagcacaaataaaaatatatcgtgattttttatcca |
206 |
Q |
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| T |
6207978 |
tggtgaaaactctatttattagtcacaatataatttcaagtatgtttttgggaccaattctatggagcacaaataaaaatatatcgtgattttttatcca |
6208077 |
T |
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| Q |
207 |
atgatagaaaagatatttgtacatggtacaagattattttgtttgtgtatgctaataaaacatgtttttggtacttgaccnnnnnnnnnntgtttttggt |
306 |
Q |
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| T |
6208078 |
atgatagaaaagatatttgtacatggtataagattattttgtttgtgtatgctaataaaacatgtttttggtacttgacc--aaaaaaaatgtttttggt |
6208175 |
T |
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| Q |
307 |
ctctctaatattagacctctatatatgtctggtcctacaagtacaagttagatctcaaaatgctgaggaagaacatatgtctttaaacgcaagttagcat |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |
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| T |
6208176 |
ctctctaatattagacctctatatatgtctggtcctacaagtacaagttagatctcaaaatgccgacgaagaacatatatctttaaacgcaagttagcat |
6208275 |
T |
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| Q |
407 |
gacccatacaaaaattacgactaagaacatttacttgtatgtcgcagaatact |
459 |
Q |
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| T |
6208276 |
gtcccatacaaaaattacgactaagaacatttacttgtatgtcgcagaatact |
6208328 |
T |
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