View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_16 (Length: 370)
Name: NF15906_high_16
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 42695853 - 42696193
Alignment:
| Q |
15 |
gaaaagaattgggtatttttgtataccgttgatttttcaacatttcattctaattaaaagaacatgatctatctagaaatcttataagagcatgcgtata |
114 |
Q |
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| T |
42695853 |
gaaaagaattgggtatttttgtataccgttgatttttcaacatttcattctaattaaaagaacatgatctatctagaaatcttataagagcatgcgtata |
42695952 |
T |
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| Q |
115 |
aagcaagtggacaaaaacaaataagggaacaaaaaatcagtcatgggtagctcttttatttgtctgtatatattttttcatatgatataattactttaat |
214 |
Q |
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| T |
42695953 |
aagcaagtggacaaaaacaaataagggaacaaaaaatcagtcatgggtagctcttttatttgtctgtatatattttttcatatgatataattattttaat |
42696052 |
T |
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| Q |
215 |
ttaaatgtgggattcgaatcatgaactaatttgaattcaaggccaattacccagaacaaagtacattatttaatttattgaattatgtcttttcaaaagt |
314 |
Q |
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| T |
42696053 |
ttaaatgtgggattcgaatcatgaactaatttgaattcaaggccaattacccagaacaaagtacattatttaatttattgaattatgtcttttcaaaagt |
42696152 |
T |
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| Q |
315 |
tgatgcatatttcctaaacccttatcttatagtcaaaatat |
355 |
Q |
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| T |
42696153 |
tgatgcatatttcctaaacccttatcttatagtcaaaatat |
42696193 |
T |
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