View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_19 (Length: 351)
Name: NF15906_high_19
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 13114015 - 13113689
Alignment:
| Q |
10 |
aaagaaagaaaatgtggtttttgtttgagtcgttctcactttgatgccatttagcagaaggatcaacgatagggttttatagatggaggaagaataatat |
109 |
Q |
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| T |
13114015 |
aaagaaagaaaatgtggtttttgtttgagtcgttctcactttgatgccatttaccag---gattaacgacctggttttatagatggaggaagaataatat |
13113919 |
T |
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| Q |
110 |
ctgtgcataattatccaaaacttaagaggatagcattgaccatttattaatggaaaatattctcttaaatatctttactatatgtgtgatttttcaaat- |
208 |
Q |
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| T |
13113918 |
ctatgcataattatccaaaacttaagaggatagcattgaccatttattaatggaaaatattctcttaaatatctttactatatgtgtgatttttcaaatc |
13113819 |
T |
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| Q |
209 |
---catgttggggttaaaatccatacttgattcatttacgataactttatctgggaatatattgattccaacatagtatagctttgtagacactcagaaa |
305 |
Q |
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| T |
13113818 |
atgcatgttggggttaaagtccatacttgattcatttacgataactttatctgggaatatattgattccaacatagtatagctttgtagacactcagaaa |
13113719 |
T |
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| Q |
306 |
attggacacgccagagattctatttggact |
335 |
Q |
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| T |
13113718 |
attggacacgccagagattctatttggact |
13113689 |
T |
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