View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_20 (Length: 344)
Name: NF15906_high_20
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_20 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 42080256 - 42079920
Alignment:
| Q |
1 |
ctgattgttttggccagtacaaacacaccaccttcatctcggatacagataccaatgtcggttttgttatgatggtttgaaaacacggcgtcaatattac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42080256 |
ctgattgttttggccagtacaaacacaccaccttcatctcgaatacaaataccaatgtcggttttgttatgatggtttgaaaacacggcgtcaatattac |
42080157 |
T |
|
| Q |
101 |
atttcatttgaccttgcgcaggaggctgccaacgaacctgaacagtagtcgtgacagtaggagttacgtgagcagctgctgtaatatgattagcagtagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42080156 |
atttcatttgaccttgcgcaggaggctgccaacgaacctgaacagtagtcgtgacagtaggagttacgtgagcagctgttgtaatatgattagcagtagg |
42080057 |
T |
|
| Q |
201 |
cgcagcttgcacgttggaacatggaacatccgcgagcttccaatcttctaccatggacctagctctttcgaccaccgttgcacaggtttacgttttgtct |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
42080056 |
cgcagcttgcacgttggaacatggaacattcgcgagcttccaatcttctaacatggacctagctctttcaaccaccgttgcacaagtttatgttttgtct |
42079957 |
T |
|
| Q |
301 |
tcctacactttgacattcctatgcttccaaatactcc |
337 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
42079956 |
tcccacactttgacattcctatgcttccaaatactcc |
42079920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 2 - 337
Target Start/End: Original strand, 13949137 - 13949474
Alignment:
| Q |
2 |
tgattgttttggccagtacaaacaca--ccaccttcatctcggatacagataccaatgtcggttttgttatgatggtttgaaaacacggcgtcaatatta |
99 |
Q |
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|||||||| |||||||| ||||| || ||||||||||||| || | ||||||||| | ||||| | ||| |||||||| |||| | |||||||||| | |
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| T |
13949137 |
tgattgttctggccagtgcaaacgcataccaccttcatctcagagatagataccaacgccggttctattacgatggtttaaaaatgcagcgtcaatatca |
13949236 |
T |
|
| Q |
100 |
catttcatttgaccttgcgcaggaggctgccaacgaacctgaacagtagtcgtgacagtaggagttacgtgagcagctgctgtaatatgattagcagtag |
199 |
Q |
| |
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||| ||||| ||||||||| ||||||||||||||||||||||| |||| ||||| || || |||| |||||||||||| | |||||||| |||||||| |
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| T |
13949237 |
catatcattcaaccttgcgcgggaggctgccaacgaacctgaacggtagccgtgatagcagaagttgcgtgagcagctgttataatatgaccagcagtag |
13949336 |
T |
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| Q |
200 |
gcgcagcttgcacgttggaacatggaacatccgcgagcttccaatcttctaccatggacctagctctttcgaccaccgttgcacaggtttacgttttgtc |
299 |
Q |
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|| || ||||| | |||| ||| || |||| | |||||||||||||||| |||||| ||||||||||||| ||||| || ||| | |||| ||| ||| |
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| T |
13949337 |
gcacaacttgcccattggtacaagggacattcacgagcttccaatcttcaaccatgaacctagctctttcaaccactgtcgcataagtttctgttatgtt |
13949436 |
T |
|
| Q |
300 |
ttcctacactttgacattcctatgcttccaaatactcc |
337 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
13949437 |
ttcccacactttgacattcctatgcttccaaatactcc |
13949474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 27393616 - 27393711
Alignment:
| Q |
234 |
gagcttccaatcttctaccatggacctagctctttcgaccaccgttgcacaggtttacgttttgtcttcctacactttgacattcctatgcttcca |
329 |
Q |
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||||| |||||| || |||||||||||| ||| || |||||||| ||| | || | ||| |||||||| ||||||||||||||||||| ||||| |
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| T |
27393616 |
gagctgccaatcctcaaccatggacctaactcggtcaaccaccgtcgcataagtctttgttatgtcttcccacactttgacattcctatgtttcca |
27393711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 27393327 - 27393433
Alignment:
| Q |
1 |
ctgattgttttggccagtacaaacacaccaccttcatctcggatacagataccaatgtcggttttgttatgatggtttgaaaacacggcgtcaatattac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || | ||| ||||| || ||| || | ||| || |||| | ||||| | | ||||| |||| |
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| T |
27393327 |
ctgattgttttggccaaaacaaacacaccaccttcatcacgaagacatataccgatatcgattctattacgaaggttaggaaacatgacatcaatgttac |
27393426 |
T |
|
| Q |
101 |
atttcat |
107 |
Q |
| |
|
||||||| |
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|
| T |
27393427 |
atttcat |
27393433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 40299692 - 40299656
Alignment:
| Q |
2 |
tgattgttttggccagtacaaacacaccaccttcatc |
38 |
Q |
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||||| |||||||||| |||||||||||||||||||| |
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| T |
40299692 |
tgattattttggccagaacaaacacaccaccttcatc |
40299656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 14995145 - 14995003
Alignment:
| Q |
2 |
tgattgttttggccagtacaaacacaccaccttcatctcggatacagataccaatgtcggttttgttatgatggtttgaaaacacggcgtcaatattaca |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||| ||||| | ||| ||||||||||||| ||| ||| ||||||| |
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| T |
14995145 |
tgattgttttgaccagtacaaacacaccaccctcatctcggagacaaataccaatgccggttctattacgatggtttgaaaatgtggc-tcagtattaca |
14995047 |
T |
|
| Q |
102 |
tttcatttgaccttgcgcaggaggctgccaacgaacctgaacag |
145 |
Q |
| |
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|| |||| ||||||||| |||||||||||||| |||||||||| |
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| T |
14995046 |
ttacattcgaccttgcgtgggaggctgccaacgcacctgaacag |
14995003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 337
Target Start/End: Complemental strand, 14994592 - 14994488
Alignment:
| Q |
233 |
cgagcttccaatcttctaccatggacctagctctttcgaccaccgttgcacaggtttacgttttgtcttcctacactttgacattcctatgcttccaaat |
332 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||| |||||||| ||| | |||| || ||||||| |||||||||||||||||||||||||||| |
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| T |
14994592 |
cgagcttccaatcttctaccatcgacctaactctttcaaccaccgtcgcataagtttctgtgatgtcttcgcacactttgacattcctatgcttccaaat |
14994493 |
T |
|
| Q |
333 |
actcc |
337 |
Q |
| |
|
||||| |
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|
| T |
14994492 |
actcc |
14994488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 17392571 - 17392672
Alignment:
| Q |
235 |
agcttccaatcttctaccatggacctagctctttcgaccaccgttgcacaggtttacgttttgtcttcctacactttgacattcctatgcttccaaatac |
334 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| |||||| | |||| ||||| |||| ||| ||| ||||||| |||||||||||||||||||| | |
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| T |
17392571 |
agcttccaatattc-accatggacctagctctttcaaccaccatcacacaagtttatgtttcgtcatcccacactttaacattcctatgcttccaaatgc |
17392669 |
T |
|
| Q |
335 |
tcc |
337 |
Q |
| |
|
||| |
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|
| T |
17392670 |
tcc |
17392672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 43649 - 43551
Alignment:
| Q |
231 |
cgcgagcttccaatcttctaccatggacctagctctttcgaccaccgttgcacaggtttacgttttgtcttcctacactttgacattcctatgcttcca |
329 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||| | |||||| | ||||| |||| ||| |||||||| ||| ||||||||||||||| ||||| |
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| T |
43649 |
cgcgagctgccaatcctcaaccatggacctagctcaaccaaccaccatcgcacaagtttctgttatgtcttcccacaatttgacattcctatgtttcca |
43551 |
T |
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