View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_22 (Length: 330)
Name: NF15906_high_22
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 30053373 - 30053680
Alignment:
| Q |
12 |
agatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaa |
111 |
Q |
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| T |
30053373 |
agatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaa |
30053472 |
T |
|
| Q |
112 |
tgcgttgaggaattggcttcagaccgaccaacaatgagtgaagttgtgaaagcgttagaaaccatattacataacgatgggatgattacaaattctactt |
211 |
Q |
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| T |
30053473 |
tgcgttgagggattggcttcagaccgaccaacaatgagtgaagttgtgaaagccttagaaaccatattacataacgatgggatgattacaaattctactt |
30053572 |
T |
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| Q |
212 |
cagcttcttcatctgccgctaattttgaagtttctaaaggtgctgcaacaagacatccttacattgatactctttttacaaagaaggatgatggtattga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30053573 |
cagcttcttcatctgccgctaattttgaagtttctaaaggtgctgcagcaagacatccttacattgatactctttttacaaagaaggatgatggtattga |
30053672 |
T |
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| Q |
312 |
gagagatg |
319 |
Q |
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||| |||| |
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| T |
30053673 |
gagtgatg |
30053680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 30037336 - 30037642
Alignment:
| Q |
13 |
gatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30037336 |
gatgaagagtattatggtttaagggaactaatggatccagtggtgagaaacacagccaacctgataggatttggaaggttcttagagttggcaatgcaat |
30037435 |
T |
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| Q |
113 |
gcgttgaggaattggcttcagaccgaccaacaatgagtgaagttgtgaaagcgttagaaaccatattacataacgatgggatgattacaaattctacttc |
212 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||| |
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| T |
30037436 |
gtgttgaggaattggcttcagaccgaccaacaatgagtgaagttgtgaaagcgttagaaaccatattacaaaatgatggaattaatacaaattccacttc |
30037535 |
T |
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| Q |
213 |
agcttcttcatctgccgctaattttgaagtttctaaaggtgctgcaacaagacatccttacattgatactctttttacaaagaaggatgatggtattgag |
312 |
Q |
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|||||| ||||||||| || | ||| | | |||||| |||||||||| ||||||||||| ||||||| | |||||| ||||||||| ||| ||||||| |
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| T |
30037536 |
agcttcatcatctgccactgactttaatgcttctaagggtgctgcaatgagacatccttatattgataatacttttactaagaaggataatgttattgag |
30037635 |
T |
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| Q |
313 |
agagatg |
319 |
Q |
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|| |||| |
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| T |
30037636 |
agtgatg |
30037642 |
T |
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