View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_24 (Length: 324)
Name: NF15906_high_24
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 7e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 64 - 304
Target Start/End: Complemental strand, 32267846 - 32267611
Alignment:
| Q |
64 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
163 |
Q |
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| T |
32267846 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
32267747 |
T |
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| Q |
164 |
tacatattcggtggatgtaaagaattgnnnnnnnnnnnnnnnnncctaccgtacgtgggttctaaaattcggcacttttgatagtacattgaaacgttgg |
263 |
Q |
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| T |
32267746 |
tacatattcggtggatgtaaagaatt-ttttattttttatttttcctac----cgtgggttctaaaattcggcagttttgatagtacattgaaacgttgg |
32267652 |
T |
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| Q |
264 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcattt |
304 |
Q |
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| T |
32267651 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcattt |
32267611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 32272013 - 32271836
Alignment:
| Q |
1 |
actttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatgaatagttttggagaatg |
100 |
Q |
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| T |
32272013 |
actttcttacaattatttgttgtgtcattttggaactactatttagtgatttcttcaagtttctatagatatga---ttcatgaata-ttttggagaatg |
32271918 |
T |
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| Q |
101 |
gataaaagtgttcatatatgta--gagtgtagcaagataaattacggtagacatatttttatcattacatattcggtggatgta |
182 |
Q |
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| T |
32271917 |
gataaaagggttcatttatgtattgagtgtagcaagataaattattgtatacatatttttatc--tacatattcggtggatgta |
32271836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 32271809 - 32271744
Alignment:
| Q |
217 |
cgtgggttctaaaattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcct |
285 |
Q |
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| T |
32271809 |
cgtgggttctaaaattcggcacttttgata---cattcaaacgttgggccatggtaaaatttcagtcct |
32271744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 14446615 - 14446684
Alignment:
| Q |
229 |
aattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcctaaaatttgatgtgtca |
301 |
Q |
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| T |
14446615 |
aattcggcacttatgata---cattcaaacgttggaccatggtaaaatttcagtccttcaatttgaggtgtca |
14446684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 48170035 - 48169925
Alignment:
| Q |
3 |
tttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatgaata-gttttggagaatgg |
101 |
Q |
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| T |
48170035 |
tttcttacaattatttatcatgtctttttgaaactaccatccaatgattccttctaggttttataaatatga---ttcatgaatattttttggagaaagg |
48169939 |
T |
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| Q |
102 |
ataaaagtgttcat |
115 |
Q |
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| T |
48169938 |
actaaagtgttcat |
48169925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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