View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15906_high_28 (Length: 287)

Name: NF15906_high_28
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15906_high_28
NF15906_high_28
[»] chr2 (15 HSPs)
chr2 (1-275)||(11533717-11533984)
chr2 (1-77)||(2916377-2916453)
chr2 (1-77)||(40987656-40987732)
chr2 (1-79)||(13559573-13559651)
chr2 (1-76)||(16973064-16973139)
chr2 (8-77)||(16973343-16973412)
chr2 (1-79)||(44594245-44594324)
chr2 (1-80)||(44594510-44594589)
chr2 (1-73)||(38982829-38982901)
chr2 (3-54)||(2916651-2916702)
chr2 (9-76)||(24125670-24125737)
chr2 (1-53)||(38982580-38982632)
chr2 (7-70)||(40987924-40987987)
chr2 (1-51)||(24126195-24126245)
chr2 (1-51)||(24125925-24125975)
[»] scaffold0781 (1 HSPs)
scaffold0781 (1-76)||(5307-5382)
[»] chr6 (11 HSPs)
chr6 (1-76)||(2216850-2216925)
chr6 (1-78)||(24690353-24690430)
chr6 (1-78)||(11644019-11644097)
chr6 (1-77)||(24798624-24798700)
chr6 (1-71)||(11643754-11643824)
chr6 (1-74)||(24690618-24690691)
chr6 (1-78)||(24798894-24798971)
chr6 (4-79)||(18494731-18494805)
chr6 (1-76)||(18495004-18495079)
chr6 (3-54)||(9955643-9955694)
chr6 (3-54)||(9954829-9954880)
[»] chr1 (10 HSPs)
chr1 (1-78)||(10824641-10824718)
chr1 (1-80)||(19056423-19056502)
chr1 (1-74)||(37189620-37189693)
chr1 (1-75)||(15825793-15825865)
chr1 (1-77)||(22683140-22683216)
chr1 (1-76)||(37189368-37189442)
chr1 (1-79)||(18844720-18844799)
chr1 (1-59)||(18844476-18844534)
chr1 (1-76)||(19056150-19056225)
chr1 (1-53)||(10824391-10824443)
[»] chr8 (10 HSPs)
chr8 (1-77)||(13884488-13884564)
chr8 (1-76)||(13884760-13884835)
chr8 (1-77)||(29714541-29714617)
chr8 (1-76)||(42126656-42126731)
chr8 (1-77)||(43416262-43416338)
chr8 (1-78)||(11867954-11868030)
chr8 (1-54)||(2554122-2554175)
chr8 (1-78)||(42126380-42126457)
chr8 (1-76)||(29714814-29714889)
chr8 (3-54)||(26746012-26746063)
[»] chr4 (11 HSPs)
chr4 (1-81)||(47097069-47097149)
chr4 (1-77)||(50509400-50509476)
chr4 (1-78)||(55173525-55173602)
chr4 (1-78)||(39161559-39161636)
chr4 (1-80)||(47096796-47096874)
chr4 (1-78)||(39161286-39161363)
chr4 (7-76)||(55173334-55173403)
chr4 (27-76)||(2623449-2623498)
chr4 (1-73)||(37996068-37996140)
chr4 (3-54)||(9738140-9738191)
chr4 (3-54)||(9738956-9739007)
[»] chr3 (10 HSPs)
chr3 (1-77)||(51663522-51663598)
chr3 (1-77)||(40244624-40244700)
chr3 (1-74)||(46003520-46003593)
chr3 (1-84)||(20538206-20538289)
chr3 (1-73)||(40364229-40364301)
chr3 (14-77)||(40244873-40244936)
chr3 (1-78)||(46003246-46003323)
chr3 (1-76)||(51663250-51663325)
chr3 (1-77)||(20537925-20538001)
chr3 (1-54)||(40364063-40364116)
[»] chr7 (12 HSPs)
chr7 (1-78)||(30862216-30862293)
chr7 (1-78)||(28715914-28715991)
chr7 (1-61)||(47373734-47373794)
chr7 (8-77)||(41985909-41985978)
chr7 (4-77)||(41986183-41986256)
chr7 (11-78)||(6474562-6474629)
chr7 (1-75)||(6474281-6474355)
chr7 (1-81)||(28715637-28715717)
chr7 (1-76)||(47373462-47373539)
chr7 (22-78)||(22226665-22226721)
chr7 (3-54)||(38408174-38408225)
chr7 (1-73)||(30862492-30862564)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-77)||(22977-23053)
[»] chr5 (2 HSPs)
chr5 (1-76)||(21249362-21249437)
chr5 (25-74)||(21249629-21249678)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 11533717 - 11533984
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatatgatatgacattttcagaag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11533717 aattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgatgattgaataagcctatatgatatgacattttcagaag 11533816  T
Q  101 aacgatgtccggtgtggtaagtggtaagttgtttgctagttgggtacttgaaacgtcatgtatggtgtattggcatgcactctaacgctcaagttagtat 200  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  11533817 aacgatgtccggtgtgg-------taagttgtttgctagttgggtacttgaaacgtcttgtatggtgtatttgcctgcactctaacgctcaagttagtat 11533909  T
Q  201 ttgagcaagaaaggatgttaaagaattgtaccttggaactcagtttaaagtctccttatatggtaaaggtgcaag 275  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||||    
T  11533910 ttgagcaagaaaggatgttaaagaattgtacattggaactctgtttaaagtctccttatatagtaaaggttcaag 11533984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2916453 - 2916377
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||    
T  2916453 aattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40987732 - 40987656
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  40987732 aattggtacaaattatagttagggaaccaaattgagacaatcaattaagttaagggaccggatgattaaataagcct 40987656  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 13559573 - 13559651
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 79  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  13559573 aattgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccggatgattgaataagcctat 13559651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16973139 - 16973064
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||    
T  16973139 aattggtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 16973343 - 16973412
Alignment:
Q  8 acaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||    
T  16973343 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaataagcct 16973412  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 44594324 - 44594245
Alignment:
Q  1 aattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 79  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  44594324 aattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctat 44594245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 44594510 - 44594589
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctata 80  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||| | |||||||||||| |||||    
T  44594510 aattgatacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataagactata 44594589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38982829 - 38982901
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 73  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||| |||||||    
T  38982829 aattgatacaaattatagttaagggaccaaattgagacaatcaattaagttaagggacttggtgactgaataa 38982901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 2916651 - 2916702
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2916651 ttggtacaaataatagttaggggaccaaattgagacaatcaattaagttaag 2916702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  9 caaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38982632 - 38982580
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaa 53  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  38982632 aattggtacaaattatagttagggagccaaattgagacaatcaattaagttaa 38982580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 40987924 - 40987987
Alignment:
Q  7 tacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaa 70  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||||||||| | ||||||||    
T  40987924 tacaaattatagttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24126195 - 24126245
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagtt 51  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  24126195 aattggtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24125925 - 24125975
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagtt 51  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  24125925 aattggtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5307 - 5382
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  5307 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2216850 - 2216925
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  2216850 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 24690430 - 24690353
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  24690430 aattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11644019 - 11644097
Alignment:
Q  1 aattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  11644019 aattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagccta 11644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24798700 - 24798624
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||  || |||||||||||||    
T  24798700 aattggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaagggaccgaataattgaataagcct 24798624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11643824 - 11643754
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaat 71  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||| | |||||||||    
T  11643824 aattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24690618 - 24690691
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 74  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||||||| || | | ||||||||||||    
T  24690618 aattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24798894 - 24798971
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||||| ||||| || | | ||||||||||||||||    
T  24798894 aattgatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaataagccta 24798971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 18494805 - 18494731
Alignment:
Q  4 tggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 79  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||   |||||||||||||||||    
T  18494805 tggtacaaattatagctaggg-accaaattgagacaatcaataaagttaagggaccatgtgattgaataagcctat 18494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18495004 - 18495079
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||| ||||||||||||||| |||| |||||| | | |||||||||||||||| |||  ||||||||||||||||    
T  18495004 aattgatacaaattatagttaagggatcaaattaatataatcaattaagttaagggactagatgattgaataagcc 18495079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 9955643 - 9955694
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||    
T  9955643 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaag 9955694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 9954880 - 9954829
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||||||||||||| |||||||||||| |||  |||| |||||||||||||    
T  9954880 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaag 9954829  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10824641 - 10824718
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  10824641 aattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagccta 10824718  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19056423 - 19056502
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctata 80  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||    
T  19056423 aattggtacagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccggatgattgaataagcctata 19056502  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37189620 - 37189693
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 74  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||    
T  37189620 aattggtacaaattatagataggggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataag 37189693  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15825793 - 15825865
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagc 75  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| | |||||||||||||    
T  15825793 aattggtacaaattatagttagg--accaaattgagacaatcaattaagttaagagaccgggtgattgaataagc 15825865  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22683216 - 22683140
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  || | | |||||||||||||||    
T  22683216 aattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataagcct 22683140  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37189442 - 37189368
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| | ||||||||||||||    
T  37189442 aattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaag-gaccgggtgattgaataagcc 37189368  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 18844720 - 18844799
Alignment:
Q  1 aattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagagacctgatgattgaataagcctat 79  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| || | | |||||||||||||||||    
T  18844720 aattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggatcgggtgattgaataagcctat 18844799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18844534 - 18844476
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacc 59  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  18844534 aattgatacaaattatagttaggggaccaaattgagataatcaattaagttaagggacc 18844476  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 19056225 - 19056150
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| || | | ||||||||||||||    
T  19056225 aattgatacaaattataattaggggaccaaattaatacaatcaattaagttaagggatcaggtgattgaataagcc 19056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10824443 - 10824391
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaa 53  Q
    ||||| ||||||||||| ||||||||||||||||  | |||||||||||||||    
T  10824443 aattgatacaaattataattaggggaccaaattgcaataatcaattaagttaa 10824391  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13884564 - 13884488
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  13884564 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13884760 - 13884835
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||||    
T  13884760 aattggtacaaattatagttaggggactaaattgagacaatcaattaagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29714617 - 29714541
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||    
T  29714617 aattggtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 29714541  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42126656 - 42126731
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| | ||||||||||||||    
T  42126656 aattggtacaaattatagttaggggatcaaattgagataatcaattaagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43416338 - 43416262
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  43416338 aattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcct 43416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11867954 - 11868030
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  11867954 aattgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaag-gaccaggtgattgaataagccta 11868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2554122 - 2554175
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2554122 aattggaacaaattatagttaggggatcaaattgagacaatcaattaagttaag 2554175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 42126457 - 42126380
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||| |||||||||||||||| | | |||||||||||||| |||||||||||| |||| | ||||||||||||||||    
T  42126457 aattgatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagccta 42126380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29714814 - 29714889
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||| ||||||||||||||| ||||||||||| | |||||||||||||||||| |||| | ||||  ||||||||    
T  29714814 aattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggtgatcaaataagcc 29714889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 26746012 - 26746063
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||||||||||||| |||||||||||| |||| |||| ||| |||||||||    
T  26746012 ttggtacaaattatatttaggggaccaatttgatacaaacaaataagttaag 26746063  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 47097069 - 47097149
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatat 81  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  47097069 aattggtacaaattatagttagaggactaaattgagacaatcaattaagttaagagatcggatgattgaataagcctatat 47097149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 50509400 - 50509476
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||    
T  50509400 aattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatgattgaataagcct 50509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 55173525 - 55173602
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| | ||||||||||||||||    
T  55173525 aattggtacaaattatagttaggagatcaaattgagacaatcaattaagttaagggaccgggtgattgaataagccta 55173602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39161559 - 39161636
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||  ||| |||| |||||||||||||    
T  39161559 aattggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaaggaaccggatggttgaataagccta 39161636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 47096874 - 47096796
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctata 80  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||| || | | ||||||||||||||||||    
T  47096874 aattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataagcctata 47096796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 39161363 - 39161286
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||  || | | ||||||||||||||||    
T  39161363 aattggtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaataagccta 39161286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 55173403 - 55173334
Alignment:
Q  7 tacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||||||    
T  55173403 tacaaattatagttaggggaccaaattaagacaatcaattaagttaaggaaccggatgatcgaataagcc 55173334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 2623449 - 2623498
Alignment:
Q  27 ccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    |||||||||||||||||||||||||||| ||||   ||||||||||||||    
T  2623449 ccaaattgagacaatcaattaagttaagggaccgagtgattgaataagcc 2623498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37996140 - 37996068
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 73  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||| || | ||||| || | | |||||||||||    
T  37996140 aattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggtgattgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 9738191 - 9738140
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||||||||||||| |||||||||||| |||  |||| |||||||||||||    
T  9738191 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaag 9738140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 9738956 - 9739007
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||||||||||||| |||||||||||| |||| |||| |||| ||||||||    
T  9738956 ttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaag 9739007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 51663522 - 51663598
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  51663522 aattgctacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40244700 - 40244624
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  40244700 aattggtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggatcggatgattgaataagcct 40244624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46003520 - 46003593
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 74  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  46003520 aattggtacaaattttagttaggggaccaaattgagacaatcaattaagttaagggaccagatgattaaataag 46003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 20538206 - 20538289
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatatgat 84  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||  |||| | ||||||||||||| ||||||||    
T  20538206 aattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaaggaccgggtgattgaataagcttatatgat 20538289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40364229 - 40364301
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 73  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||   |||||||||||    
T  40364229 aattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtgattgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  14 tatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  | |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 46003323 - 46003246
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||||||  |||| | ||||||||||| ||||    
T  46003323 aattgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaaaggaccgggtgattgaataaaccta 46003246  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 51663325 - 51663250
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||| |||||||||||||||| |||||| ||| | ||||||||||||||||||||||| | ||||| ||||||||    
T  51663325 aattgatacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaataagcc 51663250  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20538001 - 20537925
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    |||||| ||||||||||||||||||| |||||||| |  ||||||||||||||| |||| ||||||| |||| ||||    
T  20538001 aattggaacaaattatagttaggggatcaaattgataatatcaattaagttaagggaccagatgattcaataggcct 20537925  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40364116 - 40364063
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||| ||||||||||| ||| ||||||||||| ||| ||||||||||||||||    
T  40364116 aattgatacaaattataattatgggaccaaattaagataatcaattaagttaag 40364063  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30862293 - 30862216
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||    
T  30862293 aattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatgattgaataagccta 30862216  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 28715914 - 28715991
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | | ||||||||||||||    
T  28715914 aattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtaattgaataagccta 28715991  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47373734 - 47373794
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctg 61  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  47373734 aattggtacaaattataattaggggaccaaattgagacaatcaattaagttaagggacctg 47373794  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 41985978 - 41985909
Alignment:
Q  8 acaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||  | |||||||||||||||    
T  41985978 acaaattatagttaggggatcaaattgagacaatcaattaagttaagggactgggtgattgaataagcct 41985909  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 41986183 - 41986256
Alignment:
Q  4 tggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||| | |||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 6474562 - 6474629
Alignment:
Q  11 aattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| || | | ||||||||||||||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagccta 6474629  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6474355 - 6474281
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagc 75  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| || | | | |||||||||||    
T  6474355 aattgatataaattatagttaggggatcaaattgagacaatcaattaagttaagggatccggtaattgaataagc 6474281  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28715717 - 28715637
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcctatat 81  Q
    ||||| |||||||||||||||||  |||||||| | ||||| |||||||||||| |||| | ||||||||||| |||||||    
T  28715717 aattgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaataaacctatat 28715637  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47373539 - 47373462
Alignment:
Q  1 aattggtacaaattatag--ttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    |||||||||||||||||   |||| ||| |||||||||||||||||||||||||||||| |   ||||||||||||||    
T  47373539 aattggtacaaattatataattagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaataagcc 47373462  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 22226665 - 22226721
Alignment:
Q  22 ggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagccta 78  Q
    |||||||||||||||||||||||||||| |||| || | | ||||||||||||||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagccta 22226721  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 38408174 - 38408225
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaag 54  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||    
T  38408174 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaag 38408225  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30862492 - 30862564
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataa 73  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| | ||||| ||||   |||||||||||    
T  30862492 aattgatacaaattatagttagggaacaaaattgaaacaatcaattcaattaagggaccaattgattgaataa 30862564  T

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Target: scaffold0060 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22977 - 23053
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcct 77  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||||    
T  22977 aattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcct 23053  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 21249437 - 21249362
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagagacctgatgattgaataagcc 76  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||||    
T  21249437 aattggtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataagcc 21249362  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 21249629 - 21249678
Alignment:
Q  25 gaccaaattgagacaatcaattaagttaagagacctgatgattgaataag 74  Q
    ||||||||| |||||||||||||||||||| |||  ||||||||||||||    
T  21249629 gaccaaattaagacaatcaattaagttaagggacaagatgattgaataag 21249678  T

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