View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_29 (Length: 276)
Name: NF15906_high_29
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 273
Target Start/End: Complemental strand, 26080771 - 26080507
Alignment:
| Q |
9 |
ctgagatgaacacatgactgcatgcaatgcaaccgttagttaaacgatgagtgacactgaccttgggaaatccaacaattggacttgcggtaagaatagt |
108 |
Q |
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| T |
26080771 |
ctgacatgaacacatgactgcatgcaatgcaaccgttagttaaacggtgagtgacactgaccttgggaaatccaacaattggacttgcggtaagaatagt |
26080672 |
T |
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| Q |
109 |
tcgctgcagtgtgctagtccatatctagatcaccagttacaaatataaaaaatcactcatcgtttcagtatttgtcaacaacattttataaatgaactaa |
208 |
Q |
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| T |
26080671 |
tcgctgcagtgtgctagtccatatctagatcaccagttacaaatataaaaaatcactcatcgtttcagtatttgtcaacaacattttataaatgaactaa |
26080572 |
T |
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| Q |
209 |
gctgatatcagaactgatttggcgttatgtttttccaacatgtacaagaaaatgctgttatagta |
273 |
Q |
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| T |
26080571 |
gctgatatcagaactgattcggcgttatgtttttccaacatgtacaagaaaatgctgttatagta |
26080507 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 30598273 - 30598196
Alignment:
| Q |
60 |
tgacactgaccttgggaaatccaacaattggacttgcggtaagaatagttcgctgcagtgtgctagtccatatctaga |
137 |
Q |
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||||||| ||||| |||||||||||||| || | ||| || ||||| |||||||| ||||| || ||||||||||||| |
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| T |
30598273 |
tgacactaaccttaggaaatccaacaatggggcctgctgtcagaattgttcgctgtagtgtactggtccatatctaga |
30598196 |
T |
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