View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15906_high_30 (Length: 274)
Name: NF15906_high_30
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 40206741 - 40206979
Alignment:
| Q |
20 |
tgatcgcatcaatcaactgcatttgaacgtaattctctacaatataagtagtgcatgtgtctgacatgatataatatgtttaattgaatttacctgatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40206741 |
tgatcgcatcaatcaactgcatttgaacgtaattctctacaatataagtagtgcgtgtgtctgacatgatataatatgtttaattgaatttacctgatca |
40206840 |
T |
|
| Q |
120 |
tcccaggctttctcgttattgaagataacggctggtccgaaactcctagcggggttaatgcccgtaccggtaacggggatagtagccaagtgaaccatga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40206841 |
tcccaggctttctcgttattgaagataacggctggtccgaaactcctagcggggttaatgcccgtaccggtaacggggatagtagccaagtgaaccatga |
40206940 |
T |
|
| Q |
220 |
acacagcaaatccaatgggaagtggtgccaatacctatt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40206941 |
acacagcaaatccaatgggaagtggtgccaatacctatt |
40206979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 21794148 - 21794001
Alignment:
| Q |
108 |
tttacctgatcatcccaggctttctcgttattgaagataacggctggtccgaaactcctagcggggttaatgcccgtaccggtaacggggatagtagcca |
207 |
Q |
| |
|
||||||||||||||||| ||| ||| ||| |||| ||||||| ||||||||| || || |||||||| || || |||||||||||||||||||||| |
|
|
| T |
21794148 |
tttacctgatcatcccaaattttgccgtcgttgtagatcacggctgatccgaaacttcttgccgggttaataccggtgccggtaacggggatagtagcca |
21794049 |
T |
|
| Q |
208 |
agtgaaccatgaacacagcaaatccaatgggaagtggtgccaatacct |
255 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
21794048 |
agtgaaccatgaaaacagcaaatccaatgggaagtggtgccaaaacct |
21794001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 2649222 - 2649311
Alignment:
| Q |
161 |
actcctagcggggttaatgcccgtaccggtaacggggatagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaa |
250 |
Q |
| |
|
||||||||| ||||||||||| || || |||| ||| || |||||||||||||||| ||||||||||| ||||| ||||| |||||||| |
|
|
| T |
2649222 |
actcctagctgggttaatgccagttccagtaatgggaattgtagccaagtgaaccaaaaacacagcaaacccaattggaagaggtgccaa |
2649311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 41037902 - 41037813
Alignment:
| Q |
161 |
actcctagcggggttaatgcccgtaccggtaacggggatagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaa |
250 |
Q |
| |
|
||||||||| |||||||||||||| || || | || || ||||||||||| |||| |||||||||||| ||||||||||| || ||||| |
|
|
| T |
41037902 |
actcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggagccaa |
41037813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 42798155 - 42798095
Alignment:
| Q |
195 |
gggatagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaatacct |
255 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
42798155 |
gggatggttgccaaatgaaccatgaatacagcaaagccaatgggaagtggtgccaaaacct |
42798095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 40834936 - 40834995
Alignment:
| Q |
198 |
atagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaatacctat |
257 |
Q |
| |
|
|||||||| | ||||||||| ||||| ||||| ||||| |||||||||||||| |||||| |
|
|
| T |
40834936 |
atagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctat |
40834995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University