View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_31 (Length: 271)
Name: NF15906_high_31
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 2108195 - 2107955
Alignment:
| Q |
14 |
ttctttaaccaaaggtggagtttgaagttcaataatatatgaatgaacagaagaagaacaaaactacaaagccatccgacaaacactctacagttgaaag |
113 |
Q |
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| T |
2108195 |
ttctttaaccaaaggtggagtttgaagttcaataatatatgaatgaacagaagaagaacaaaaatacaaagccatctgacaaacactctacagttgaaag |
2108096 |
T |
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| Q |
114 |
ttttcaaaatcaagtttcctaatacttctttagacaaattgcattttatgttctacaaatcccttaaatttttagtaaaaatcctaggaagattgaagaa |
213 |
Q |
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| T |
2108095 |
ttttcaaaatcaagtttcctaatacttctttagacaaattgcattgtatgttctacaaatcccttacatttttagtaaaaatactaggaagattgaagaa |
2107996 |
T |
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| Q |
214 |
tataatgtatcaaaatgaagcttctttttggggtcataaat |
254 |
Q |
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| T |
2107995 |
tataatgtatcaaaatgaagcttctttttggggtcataaat |
2107955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 113 - 252
Target Start/End: Complemental strand, 2099913 - 2099781
Alignment:
| Q |
113 |
gttttcaaaatcaagtttcctaatacttctttagacaaattgcattttatgttctacaaatcccttaaatttttagtaaaaatcctaggaagattgaaga |
212 |
Q |
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| T |
2099913 |
gttttcaaaatcaagtttcctaatacttctttagacaaattgtattctatgttctactaattccctaaaattttagtaaaaatattag-------gaaga |
2099821 |
T |
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| Q |
213 |
atataatgtatcaaaatgaagcttctttttggggtcataa |
252 |
Q |
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| T |
2099820 |
atataatgtatcaaaatgaagcttctttttggggtcataa |
2099781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 2089556 - 2089513
Alignment:
| Q |
93 |
caaacactctacagttgaaagttttcaaaatcaagtttcctaat |
136 |
Q |
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| T |
2089556 |
caaacactccacagtagaaagttttcaaaatcaagtttcctaat |
2089513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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