View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_high_36 (Length: 249)
Name: NF15906_high_36
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39777164 - 39776926
Alignment:
| Q |
1 |
ttagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttgaatagcgacatcacttggaatctcctgggagtaa |
100 |
Q |
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| T |
39777164 |
ttagtaagtttgatatttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttgaatagcgacatcacttggaatctcctgggagtaa |
39777065 |
T |
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| Q |
101 |
ttcctgtgataagtggttcaattcaaaggctttcagtaattttcatcatatccaagaaaaagttaatattagcatcggcaaatgcatgttataagagttt |
200 |
Q |
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| T |
39777064 |
ttcctgtgataagtggttcaattcaaaggctttcagtaattttcatcatatccaagaaaaagttaatattagcatcggcaaatgcatgttataagagttt |
39776965 |
T |
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| Q |
201 |
tagaaaaccagaagcataccattcacttgttctcttcat |
239 |
Q |
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| T |
39776964 |
tagaaaaccagaagcataccattcacttgttctcttcat |
39776926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47798993 - 47799058
Alignment:
| Q |
1 |
ttagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttg |
66 |
Q |
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||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
47798993 |
ttagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
47799058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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