View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15906_high_37 (Length: 248)
Name: NF15906_high_37
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2999993 - 2999763
Alignment:
| Q |
1 |
agaattcaagaagcaaagagccaaagaggatatgaacaagggtgaagtacaaaaactaagttgtgggggtagatat----gatttatgtgctaccaatag |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2999993 |
agaattcaagaagcaaagagccaaagaggatatgaacaagggtgaagtacaaaaactaagttgtgggggtagatatatatgatttatgtgctaccaatag |
2999894 |
T |
|
| Q |
97 |
aattttcagacatggtcctatgtttagacaactcgaagacgaattcaaaaagtttaatcactaatatggtacaagcatgatttcttaattacgttccaag |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2999893 |
aattttcagacatggtcctatgtttagacaactcgaagaggaattcaaaaagtttaatcactaatatggcacaagcatgatttcttaattacgttccaag |
2999794 |
T |
|
| Q |
197 |
agaaatttacaaagtcataatggtgagccat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2999793 |
agaaatttacaaagtcataatggtgagccat |
2999763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University