View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15906_high_44 (Length: 237)

Name: NF15906_high_44
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15906_high_44
NF15906_high_44
[»] chr3 (4 HSPs)
chr3 (5-222)||(32032546-32032763)
chr3 (20-107)||(32025474-32025560)
chr3 (20-88)||(40042460-40042528)
chr3 (20-53)||(47861776-47861809)
[»] chr8 (2 HSPs)
chr8 (20-53)||(28824835-28824868)
chr8 (20-53)||(38376924-38376957)
[»] chr7 (2 HSPs)
chr7 (20-53)||(33256439-33256472)
chr7 (20-53)||(47942011-47942044)
[»] chr5 (2 HSPs)
chr5 (20-53)||(2600832-2600865)
chr5 (20-53)||(2601550-2601583)
[»] chr4 (1 HSPs)
chr4 (20-53)||(39232821-39232854)
[»] chr1 (2 HSPs)
chr1 (20-53)||(250394-250427)
chr1 (20-53)||(11625286-11625319)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 32032546 - 32032763
Alignment:
Q  5 tcccaagataaataaaagatttctttttaggccccccaatatctctttaatccctctaaatttacatttttaaccttaataacacgtctgttatataact 104  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32032546 tcccaagataaatagaagatttctttttcggccccccaatatctctttaatccctctaaatttacagttttaaccttaataacacgtctgttatataact 32032645  T
Q  105 accagatatcctgtatgtaactaccaaatgtttagtttgaattttcatttttgcatgtccaatacataacaaccagatgctcattttaaatttacatttt 204  Q
    |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32032646 accagtcatcctgtatgtaactaccaaatgtttagtttaaattttcatttttgcatgtccaatacataactaccagatgctcattttaaatttacatttt 32032745  T
Q  205 gtacctttgtagttatct 222  Q
    ||||||||||||||||||    
T  32032746 gtacctttgtagttatct 32032763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 32025474 - 32025560
Alignment:
Q  20 aagatttctttttaggccccccaatatctctttaatccctctaaatttacatttttaaccttaataacacgtctgttatataactacc 107  Q
    ||||||||||||||| |||   ||||||||||||  || || ||||||||||||||||||||||||||| ||| | ||||||||||||    
T  32025474 aagatttctttttagacccta-aatatctctttaggccttcaaaatttacatttttaaccttaataacatgtccgatatataactacc 32025560  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 40042528 - 40042460
Alignment:
Q  20 aagatttctttttaggccccccaatatctctttaatccctctaaatttacatttttaaccttaataaca 88  Q
    ||||||||||||||| |||||  |||| ||||||| ||| ||||| |||||||||| |||| |||||||    
T  40042528 aagatttctttttagaccccctcatatatctttaagccccctaaaattacatttttcacctcaataaca 40042460  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 47861776 - 47861809
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  47861776 aagattgctttttaggccccccaatatctcttta 47861809  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 28824868 - 28824835
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  28824868 aagattgctttttaggccccccaatatctcttta 28824835  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 38376957 - 38376924
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  38376957 aagattgctttttaggccccccaatatctcttta 38376924  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 33256472 - 33256439
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  33256472 aagattgctttttaggccccccaatatctcttta 33256439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 47942011 - 47942044
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  47942011 aagattgctttttaggccccccaatatctcttta 47942044  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 2600832 - 2600865
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  2600832 aagattgctttttaggccccccaatatctcttta 2600865  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 2601583 - 2601550
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  2601583 aagattgctttttaggccccccaatatctcttta 2601550  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 39232854 - 39232821
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  39232854 aagattgctttttaggccccccaatatctcttta 39232821  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 250427 - 250394
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  250427 aagattgctttttaggccccccaatatctcttta 250394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 11625286 - 11625319
Alignment:
Q  20 aagatttctttttaggccccccaatatctcttta 53  Q
    |||||| |||||||||||||||||||||||||||    
T  11625286 aagattgctttttaggccccccaatatctcttta 11625319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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