View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15906_high_6 (Length: 548)
Name: NF15906_high_6
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 7523318 - 7522802
Alignment:
| Q |
19 |
ggtggttctcagagttttgggtcacttgaatggagtgatggaagtcacattgtgaggagcccaattgctgctagatggagtaatggattttcctcagcat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523318 |
ggtggttctcagagttttgggtcacttgaatggagtgatggaagtcacattgtgaggagcccaattgctgctagatggagtaatggattttcctcagcat |
7523219 |
T |
|
| Q |
119 |
ctttttaaattttcactttattataatgctttgttgctgtgaaagtggaaacacattattaccatgcataggttatctatgtatgaagttaattagtctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523218 |
ctttttaaattttcactttattataatgctttgttgctgtgaaagtggaaacacattattaccatgcataggttatctatgtatgaagttaattagtctt |
7523119 |
T |
|
| Q |
219 |
gtcttcttgtaacttttctgttagcttattgtacaaactacaaaataataataatttgctacggttgttgatgtttcatgaagttgtgctctaaacttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523118 |
gtcttcttgtaacttttctgttagcttattgtacaaactacaaaataataataatttgctacggttgttgatgtttcatgaagttgtgctctaaacttat |
7523019 |
T |
|
| Q |
319 |
aagtagctgatgaaattctactaataatttatggtaattgtggttttacatatgatcatgtccattatatatgaactaatatggtagcattgcacttgca |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
7523018 |
aagtagctgatgaaggtctactaataatttatggtaattgtggttttacatatgatcatgtccattatatatgaactgatatggcagcattgcacttgca |
7522919 |
T |
|
| Q |
419 |
ccaacatcgtttcacactgaaacctgacataacatgtgtttgggatgttttgtaacattgctaactatccaggaatacttatatgtgcatattggcatat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7522918 |
ccaacatcgtttcacactgaaacctgacataacatgtgtttgggatgttttgtaacattgctaactatccaggaatac-tatatgtgcatattggcatat |
7522820 |
T |
|
| Q |
519 |
tcttcttcaaacaatatt |
536 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7522819 |
tcttcttcaaacaatatt |
7522802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University