View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15906_low_1 (Length: 968)

Name: NF15906_low_1
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15906_low_1
NF15906_low_1
[»] chr8 (5 HSPs)
chr8 (389-968)||(42080713-42081294)
chr8 (1-369)||(42080317-42080685)
chr8 (68-215)||(20526245-20526393)
chr8 (148-294)||(37590031-37590177)
chr8 (169-211)||(23558673-23558715)
[»] scaffold0019 (1 HSPs)
scaffold0019 (20-303)||(73323-73607)
[»] chr1 (6 HSPs)
chr1 (79-303)||(34696088-34696313)
chr1 (148-215)||(2002610-2002677)
chr1 (157-207)||(30981235-30981285)
chr1 (147-243)||(4614889-4614985)
chr1 (155-294)||(24065220-24065359)
chr1 (147-218)||(41117188-41117259)
[»] chr5 (8 HSPs)
chr5 (11-295)||(13948782-13949065)
chr5 (1-252)||(40299754-40300006)
chr5 (11-116)||(3051098-3051203)
chr5 (152-299)||(3050946-3051093)
chr5 (23-165)||(27393101-27393245)
chr5 (136-299)||(29754943-29755105)
chr5 (130-215)||(26683459-26683544)
chr5 (147-243)||(2157822-2157918)
[»] chr6 (3 HSPs)
chr6 (11-284)||(17391994-17392266)
chr6 (148-312)||(17397770-17397929)
chr6 (147-209)||(16416600-16416662)
[»] chr2 (6 HSPs)
chr2 (147-200)||(14995196-14995249)
chr2 (82-200)||(10973636-10973755)
chr2 (147-262)||(11818469-11818584)
chr2 (26-166)||(2973541-2973682)
chr2 (136-299)||(14231011-14231177)
chr2 (148-209)||(11502322-11502383)
[»] scaffold0013 (2 HSPs)
scaffold0013 (11-122)||(43980-44091)
scaffold0013 (145-219)||(42499-42573)
[»] chr7 (5 HSPs)
chr7 (147-243)||(48100785-48100881)
chr7 (147-239)||(15633228-15633320)
chr7 (147-311)||(30622473-30622637)
chr7 (148-294)||(32480215-32480361)
chr7 (148-217)||(26016528-26016597)
[»] chr3 (5 HSPs)
chr3 (139-279)||(45680113-45680253)
chr3 (147-243)||(18357106-18357203)
chr3 (148-209)||(53437536-53437597)
chr3 (147-224)||(49499409-49499486)
chr3 (148-209)||(53394835-53394896)
[»] scaffold1964 (1 HSPs)
scaffold1964 (26-206)||(989-1170)
[»] chr4 (4 HSPs)
chr4 (136-279)||(54027711-54027854)
chr4 (35-299)||(12355110-12355375)
chr4 (147-243)||(37061094-37061190)
chr4 (148-295)||(18878174-18878321)


Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 389 - 968
Target Start/End: Original strand, 42080713 - 42081294
Alignment:
Q  389 gcttgttttggtcttcgaatttccgtgcctcggtttcatcaaaacccttccagtttcacaaattgaataacgataaacaattttggttcctaaattactt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42080713 gcttgttttggtcttcgaatttccgtgcctcggtttcatcaaaacccttccagtttcacaaattgaataactataaacaattttggttcctaaattactt 42080812  T
Q  489 tgccgttcttcgaatcgatagaattcgtttcagcgaaatcgtgtattagataacgcgattctcaatggaatcagatttcgagacgaacgatatgctcaca 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42080813 tgccgttcttcgaatcgatagaattcgtttcagcgaaatcgtgtattagataacgcgattctcaatggaatcagatttcgagacgaacgatatgctcaca 42080912  T
Q  589 ctctcacaggattcatttgatgatgccaacgacaatgtaacttcctcttattgctctctctttcttcattcatatcaattttcacttcttaaacccttat 688  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  42080913 ctctcacaagattcatttgatgatgccaacgacaatgtaacttcctcttattgctctctctttcttaattcatattaattttcacttcttaaacccttat 42081012  T
Q  689 tcattgctgtttatggcttattcaaataatatgtaagcaataagcattcttaagattaatgttgtgtaactcgtaacaggataatttggatgttgaaggt 788  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42081013 tcattgctgtttatggcttattcaaataatatgtaagcaataagcattcttaagattaatgttgtgtaactcgtaacaggataatttggatgttgaaggt 42081112  T
Q  789 gaaacatgtggaatatgtatggatatggttattgacaggggagtattagattgctgtcagcactggtatttcttctatttcaccccctttttattcaact 888  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42081113 gaaacatgtggaatatgtatggatatggttattgacaggggagtattagattgctgtcagcactggtatttcttctatttcaccccctttttattcaact 42081212  T
Q  889 caatatgttaattttctttcct--atgtttcagtgtgcttgttgaaatatgaatatgatattttttggatgcttcatttgtt 968  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42081213 caatatgttaattttctttccttcatgtttcagtgtgcttgttgaaatatgaatatgatattttttggatgcttcatttgtt 42081294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 42080317 - 42080685
Alignment:
Q  1 atgggttagcgacatgcaactcgacaatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42080317 atgggttagcgacatgcaactcgacaatatcgactttgaagttgattccaaaaccacgaaagttggcatttactcaggtagggaagacatctctgaatta 42080416  T
Q  101 ggtaatattatcacggcttcccggttcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactct 200  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42080417 ggtaatattataatggcttcccggttcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagcaaatgtgattgctcatactct 42080516  T
Q  201 tgcaggagagaccacgtttgtagccaattccgttgtttattttcatacaccaaattatattggaattttgattattaataatatgcaataagcaccttta 300  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42080517 tgcaggagagaccacatttgtagccaatcccgttgtttattttcatacaccaaattatattggaactttgattattaataatatgcaataagcaccttta 42080616  T
Q  301 tttcataaaaatgtttaatcctaactnnnnnnntttaaactccgagaatgcctgattgtccaaataatc 369  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  42080617 tttcataaaaatgtttaatcctaactaaaaaaatttaaactccgagaatgcctgattgtccaaataatc 42080685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 20526393 - 20526245
Alignment:
Q  68 atttactgaggtagggaagacatctctgaattaggtaatattatcacggcttcccggttctt-ctctcttccaagttcaacaactctcgggtggagtttg 166  Q
    |||||||  ||| ||||||||||  ||||| | ||||| |||||||  ||||||||||| || ||||| | ||| || | ||||||||||||||||||||    
T  20526393 atttactcgggtcgggaagacataactgaagtcggtaacattatcattgcttcccggtttttgctctcgttcaaatttaccaactctcgggtggagtttg 20526294  T
Q  167 ctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccac 215  Q
     | || ||||||| |||||| | ||||||||||| ||||| ||| ||||    
T  20526293 ttcggcgacaagttaatgtggtggctcatactctcgcaggggaggccac 20526245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 294
Target Start/End: Complemental strand, 37590177 - 37590031
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcata 247  Q
    |||||| |||||||||||| |||| ||||||  || ||| |||||||| |||||||| | ||| |||||| | |||| | |||||  ||||||||| |||    
T  37590177 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaata 37590078  T
Q  248 caccaaattatattggaattttgattattaataatatgcaataagca 294  Q
     ||| |||| ||||| || | | ||||||||| | |||| |||||||    
T  37590077 tacccaattgtattgaaactcttattattaatgaaatgctataagca 37590031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 23558673 - 23558715
Alignment:
Q  169 aggagacaagtaaatgtgattgctcatactcttgcaggagaga 211  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||    
T  23558673 aggagacaagcaaatgtggttgttcatactcttgcaggagaga 23558715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 73607 - 73323
Alignment:
Q  20 ctcgacaatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaattaggtaatattatcacggctt 119  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||||  ||| ||||||||||||||||||||||| ||||||||||||||||    
T  73607 ctcgacaatatcaactttgaagttgattccaaaaccacgaaagatgccatttacccaggaagggaagacatctctgaattaggaaatattatcacggctt 73508  T
Q  120 cccgg-ttcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtt 218  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |||| || |||||||||||||||||    
T  73507 ctcgggttcttctctcttccaagttcaacaactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtt 73408  T
Q  219 tgtagccaattccgttgtttattttcatacaccaaattatattggaattttgattattaataatatgcaataagcacctttattt 303  Q
    | |||| | | |||||||||| ||| ||| ||| |||| ||||| || ||||||||||||| |||||  |||| |||||||||||    
T  73407 tctagctagtcccgttgtttacttttatatacccaattgtattgaaactttgattattaatgatatgttataaacacctttattt 73323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 3e-69; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 79 - 303
Target Start/End: Complemental strand, 34696313 - 34696088
Alignment:
Q  79 tagggaagacatctctgaattaggtaatattatcacggcttcccgg-ttcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaa 177  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34696313 tagggaagacatctctttattatgtaatattatcacggcttcccggattcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaa 34696214  T
Q  178 gtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcatacaccaaattatattggaattttgattatta 277  Q
    | ||||||| ||||||||||||| | |||||||||||||||| |||| | |  ||||||||||||||||| |||  ||| ||||| || |||||||||||    
T  34696213 gaaaatgtggttgctcatactctcgaaggagagaccacgtttctagctagtctcgttgtttattttcatataccccattgtattgaaactttgattatta 34696114  T
Q  278 ataatatgcaataagcacctttattt 303  Q
    || |||||  ||||||||||||||||    
T  34696113 atgatatgatataagcacctttattt 34696088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 2002677 - 2002610
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccac 215  Q
    |||||||||||||||||||  |||||||||| ||||||| ||||||||||||| ||| ||||||||||    
T  2002677 aactctcgggtggagtttgtcaggagacaagcaaatgtggttgctcatactctcgcatgagagaccac 2002610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 30981235 - 30981285
Alignment:
Q  157 gtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcagga 207  Q
    |||||||||| |||||||||| |||||||| ||||||||||||| ||||||    
T  30981235 gtggagtttgttaggagacaaataaatgtggttgctcatactctcgcagga 30981285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 4614889 - 4614985
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttatttt 243  Q
    ||||||| ||||||||||||||||| |||||  ||||||| ||||||||   ||||||| |||  |||||||| || | | |||||||||| |||||    
T  4614889 caactctagggtggagtttgctaggcgacaaacaaatgtggttgctcatgtgcttgcagaagaagccacgtttctaactagttccgttgttgatttt 4614985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 294
Target Start/End: Original strand, 24065220 - 24065359
Alignment:
Q  155 gggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcatacaccaaa 254  Q
    |||||||||||| |||| |||||| ||| | | ||||||||  ||||||||||||  |||||||  |||| | | |||||||||||||||| | |||  |    
T  24065220 gggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttgtttattttcacatacccga 24065319  T
Q  255 ttatattggaattttgattattaataatatgcaataagca 294  Q
    || ||||| | || | ||||||||| | |||| |||||||    
T  24065320 ttgtattgaacttcttattattaatgaaatgctataagca 24065359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 41117188 - 41117259
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtt 218  Q
    |||||||||||||||||||| |||| ||||||  |||| | |||||||| |||||||| ||||  |||||||    
T  41117188 caactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgtt 41117259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 4e-50; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 13949065 - 13948782
Alignment:
Q  11 gacatgcaactcgacaatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaattaggtaatatta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||  || | |||||| || ||||||| |||||| ||||||||||||| |||    
T  13949065 gacatgcaactcgacaatatcgactttgaagttgattccaaaaccataaaatatgtcgtttactcag-tagggaaaacatctttgaattaggtaatgtta 13948967  T
Q  111 tcacggcttcccgg-ttcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggaga 209  Q
    | || ||||| |   |||||||||||||||||||||| |||| | || || |||||| ||||||||||| ||||||  || |||||||||| ||| ||||    
T  13948966 t-actgcttctcaaattcttctctcttccaagttcaataactattggatgaagtttgttaggagacaagcaaatgtagtttctcatactctcgcatgaga 13948868  T
Q  210 gaccacgtttgtagccaattccgttgtttattttcatacaccaaattatattggaattttgattattaataatatgcaataagcac 295  Q
    |  ||||||| |||| | |||||||||||||||||||| |||  ||| ||||| || ||||||||||| | |||||| ||||||||    
T  13948867 ggtcacgtttctagctagttccgttgtttattttcatataccctattgtattgaaactttgattattattgatatgctataagcac 13948782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 40299754 - 40300006
Alignment:
Q  1 atgggttagcgacatgcaactcgacaatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaatta 100  Q
    |||||| || |||||||||||||||||||| |  |||||| |||||||||||| ||| | || ||  ||||||| ||  | ||||||||| | |||||||    
T  40299754 atgggtgagtgacatgcaactcgacaatattggttttgaaattgattccaaaagcacaagagatgcgatttactcagacaaggaagacatttatgaatta 40299853  T
Q  101 ggtaatattatcacggcttcccg-gttcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactc 199  Q
    || ||||| | |||  |||||   ||| | || || ||||||||||||||||||||||||||||||| |||| |||||| ||| ||| ||||||||||||    
T  40299854 ggcaatatcaccacaacttccgaagttatgctttcctccaagttcaacaactctcgggtggagtttgttaggcgacaagcaaacgtggttgctcatactc 40299953  T
Q  200 ttgcaggagagaccacgtttgtagccaattccgttgtttattttcatacacca 252  Q
    | | || |||| |||| ||| | || | |||||||||||||||||||| ||||    
T  40299954 tcgtagaagaggccacatttctcgctagttccgttgtttattttcatatacca 40300006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 3051203 - 3051098
Alignment:
Q  11 gacatgcaactcgacaatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaattaggtaatatta 110  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||    |||||||| |||||| ||| |||| ||||| ||||||| |||||    
T  3051203 gacatgcaacccgataatatcgactttgaaattgattccaaaaccacgaaagagaccatttactcaggtagagaaaacatatctgatttaggtactatta 3051104  T
Q  111 tcacgg 116  Q
    ||||||    
T  3051103 tcacgg 3051098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 152 - 299
Target Start/End: Complemental strand, 3051093 - 3050946
Alignment:
Q  152 ctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcatacacc 251  Q
    |||||||||| |||||||||||||||  ||||||| ||||||||||||| | |||||||| || |||  |||| ||| |||| ||||||||||||  |||    
T  3051093 ctcgggtggattttgctaggagacaaacaaatgtggttgctcatactctcgtaggagagatcatgttcctagctaatcccgtcgtttattttcatctacc 3050994  T
Q  252 aaattatattggaattttgattattaataatatgcaataagcaccttt 299  Q
      ||| ||||| || |||||| |||||| |||||| |||| |||||||    
T  3050993 ttattgtattgaaactttgatcattaatgatatgctataaacaccttt 3050946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 27393245 - 27393101
Alignment:
Q  23 gacaatatcgactttgaagttgattccaaaaccacgaa-agttggcatttactgaggtagggaagacatctctgaattaggtaatattatcacggcttcc 121  Q
    ||||||||||| ||||||||||||| ||||| ||| || || ||  ||||||  ||| ||||||||||| ||||||||||| ||||| ||||| |||||     
T  27393245 gacaatatcgattttgaagttgatttcaaaagcacaaagagatgtaatttacgcaggcagggaagacatttctgaattaggcaatatcatcacagcttct 27393146  T
Q  122 cg-gttcttctctcttccaagttcaacaactctcgggtggagttt 165  Q
     | ||| | || || | ||||||||||||||||||||||||||||    
T  27393145 tgagttttactttccttcaagttcaacaactctcgggtggagttt 27393101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 299
Target Start/End: Complemental strand, 29755105 - 29754943
Alignment:
Q  136 tccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttg 235  Q
    |||||||| | ||||||| |||||||||||| |||| ||||||  |||||| | ||||| |||||||||  |||  |||| ||| | || | | ||| |     
T  29755105 tccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaa-agaagccacatttctcgctagtcccgcta 29755007  T
Q  236 tttattttcatacaccaaattatattggaattttgattattaataatatgcaataagcaccttt 299  Q
    | |||||||||| ||| |||| ||||| || ||||||||||||| | |||| ||||||||||||    
T  29755006 tctattttcatatacccaattgtattgaaactttgattattaatgaaatgctataagcaccttt 29754943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 26683459 - 26683544
Alignment:
Q  130 ctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccac 215  Q
    ||||| ||||||||   |||||||||||||||||||| |  | ||||||| |||||| | ||||||||||||||||| ||| ||||    
T  26683459 ctctcgtccaagttttccaactctcgggtggagtttgttccgcgacaagttaatgtggtggctcatactcttgcaggggaggccac 26683544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 2157918 - 2157822
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttatttt 243  Q
    |||||||||||||||||||| |||| ||||||  || | ||||||| || |||||||| ||||  |||||||  |||| | | ||||||||||||||    
T  2157918 caactctcgggtggagtttgttaggcgacaagccaacgagattgcttatgctcttgcaagagaagccacgttactagctagtcccgttgtttatttt 2157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 17392266 - 17391994
Alignment:
Q  11 gacatgcaactcgacaatatcgactttgaagttgattccaaaaccacgaaagttgg-catttactgaggtagggaagacatctctgaattaggtaatatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||   || | |||||| |||||||||||| ||||||||||||||||         
T  17392266 gacatgcaactcgacaatatcgactttgaagttgattccaaaaacccgaaaagaggtcgtttactcaggtagggaagaaatctctgaattaggtac---- 17392171  T
Q  110 atcacggcttcccggt-tcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggag 208  Q
    |||||  |||||||   |||||||||||||| ||||||||||| ||||||| ||||| |||||||| ||| ||||||| ||||||||| ||| |||||||    
T  17392170 atcacaacttcccgaaatcttctctcttccaggttcaacaactatcgggtgaagttttctaggagataagcaaatgtggttgctcatagtctcgcaggag 17392071  T
Q  209 agaccacgtttgtagccaattccgttgtttattt-tcatacaccaaattatattggaattttgattattaataatat 284  Q
    || | |||||| |  | | | |||||||||||||  |||| |||  ||| ||||| || ||||||||||||| ||||    
T  17392070 aggctacgtttttttctagtcccgttgtttatttcccatataccctattgtattgaaactttgattattaatgatat 17391994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 148 - 312
Target Start/End: Complemental strand, 17397929 - 17397770
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcata 247  Q
    ||||||||||||||||||| ||||||| ||  ||||||       |||| ||| ||| ||||||| |||||| |||| | ||||||||||||||||||||    
T  17397929 aactctcgggtggagtttgttaggagaaaaacaaatgt-------catagtctcgcaagagagactacgtttctagctagttccgttgtttattttcata 17397837  T
Q  248 caccaaattatattggaattttgattattaata--atatgcaataagcacctttatttcataaaaat 312  Q
     |||  ||| ||||  |||||||||||||||||  |||||| |||||||||||| ||| | ||||||    
T  17397836 taccttattgtattaaaattttgattattaatatgatatgctataagcacctttttttaaaaaaaat 17397770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 16416600 - 16416662
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggaga 209  Q
    ||||||| ||||| |||||| |||| |||||||||||| | |||||| || ||||||||||||    
T  16416600 caactctagggtgtagtttgttaggcgacaagtaaatgaggttgctcgtattcttgcaggaga 16416662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 14995196 - 14995249
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactct 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14995196 caactctcgggtggagtttgctaggagacaaggaaatgtgattgctcatactct 14995249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 10973755 - 10973636
Alignment:
Q  82 ggaagacatctctgaattaggtaatattatcacggcttcccggttctt-ctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagta 180  Q
    |||||||||  | ||||| ||||| || ||||||||||||||||  || ||||| |||||||| | |||||||||||||||||||| | || ||||||      
T  10973755 ggaagacataacagaatttggtaacatcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagct 10973656  T
Q  181 aatgtgattgctcatactct 200  Q
    |||||| | ||||| |||||    
T  10973655 aatgtggtggctcacactct 10973636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 11818584 - 11818469
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcat 246  Q
    ||||||| |||||||||||| |||| |||||| ||| | | ||||||||  ||||||||||||  |||||||  |||| | | ||||| ||||||||||     
T  11818584 caactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttattttcag 11818485  T
Q  247 acaccaaattatattg 262  Q
    | ||| ||||||||||    
T  11818484 atacccaattatattg 11818469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 2973682 - 2973541
Alignment:
Q  26 aatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaattaggtaatattatcacggcttcccggt 125  Q
    ||||| || |||||||| || ||||||||||| |||| ||   ||||||  ||| ||||||||||  ||||||| || || || ||||||||||||  ||    
T  2973682 aatattgattttgaagtcgactccaaaaccacaaaagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcctagt 2973583  T
Q  126 tctt-ctctcttccaagttcaacaactctcgggtggagtttg 166  Q
      || ||||| |||||||| | ||||||||||||||||||||    
T  2973582 ctttgctctcgtccaagtttaccaactctcgggtggagtttg 2973541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 299
Target Start/End: Original strand, 14231011 - 14231177
Alignment:
Q  136 tccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttg 235  Q
    |||||||| | ||||||| | |||||||||| |||| ||||||  |||||| | ||||| ||||||||| | ||  |||| ||| | || | | |||||     
T  14231011 tccaagtttaccaactctagagtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacatttctcgctagtcccgtta 14231110  T
Q  236 tttattttcatacaccaaattatattggaattttgattattaataat---atgcaataagcaccttt 299  Q
    | |||||||||| ||| |||| ||||| || ||||||||||||| ||   |||| ||||||||||||    
T  14231111 tctattttcatatacccaattgtattgaaactttgattattaatgatgaaatgctataagcaccttt 14231177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 11502322 - 11502383
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggaga 209  Q
    |||||| |||||||||||| |||| ||||||  || ||| ||||||||||||||||| ||||    
T  11502322 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagaga 11502383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 43980 - 44091
Alignment:
Q  11 gacatgcaactcgacaatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaattaggtaatatta 110  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||| | || ||  ||||||| | ||||||||||| | |||| |||||| | ||| |    
T  43980 gacatgcaactcgacaatatcgattttgaagttgattgcaaaaacacaagagatgtgatttactcatgtagggaagacttttctgtattaggcattatca 44079  T
Q  111 tcacggcttccc 122  Q
    |||| |||||||    
T  44080 tcacagcttccc 44091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 42573 - 42499
Alignment:
Q  145 aacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgttt 219  Q
    ||||||||||||||||||||||||||| |||||  ||| ||| ||| ||||||||| | ||||||| ||||||||    
T  42573 aacaactctcgggtggagtttgctaggcgacaaacaaacgtggttgttcatactctcgtaggagaggccacgttt 42499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 48100881 - 48100785
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttatttt 243  Q
    ||||||| ||||||||||||||||| |||||| ||||||| ||||||||   |||||||||||  |||||||| |||  | | ||||||||||||||    
T  48100881 caactctagggtggagtttgctaggcgacaagcaaatgtggttgctcatgtgcttgcaggagaatccacgtttctagttagtcccgttgtttatttt 48100785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 15633228 - 15633320
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgttta 239  Q
    |||||||||||||||||||| |||| ||||||  |||| | ||||||||||||||||| ||||  |||||||  |||| | | ||||||||||    
T  15633228 caactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgttta 15633320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 311
Target Start/End: Complemental strand, 30622637 - 30622473
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcat 246  Q
    |||||||||||||||||| |  ||| |||||| | ||||| | ||||||| ||||||| ||||| |||| ||  |||| ||| |||||  ||||| |  |    
T  30622637 caactctcgggtggagttcgtcaggcgacaagcatatgtggtagctcataatcttgcaagagaggccacattattagctaatcccgtttcttattatgct 30622538  T
Q  247 acaccaaattatattggaattttgattattaataatatgcaataagcacctttatttcataaaaa 311  Q
    | ||| |||| ||||| |  |||||| || ||||| |||| |||||||| ||| |||||||||||    
T  30622537 atacccaattgtattgaatctttgatcatcaataaaatgctataagcacatttctttcataaaaa 30622473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 294
Target Start/End: Original strand, 32480215 - 32480361
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcata 247  Q
    |||||| |||||||||||| |||| ||||||  || ||| ||||||||||||||||| | ||| |||||| | |||| | | |||  ||||||||| |||    
T  32480215 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaata 32480314  T
Q  248 caccaaattatattggaattttgattattaataatatgcaataagca 294  Q
     ||  |||| ||||| || | | ||||||||| | |||| |||||||    
T  32480315 tactcaattgtattgaaactcttattattaatgaaatgctataagca 32480361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 26016528 - 26016597
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgt 217  Q
    |||||| |||||||||||| |||||||||||| |||| | || ||||| | ||| || ||||||||||||    
T  26016528 aactctagggtggagtttgttaggagacaagtcaatgcggttactcatgcacttacaagagagaccacgt 26016597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 45680253 - 45680113
Alignment:
Q  139 aagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgttt 238  Q
    ||||||| ||| | ||| ||| ||||||||||||||  |  ||||||||||||||||||||||||| ||||| |||| ||| | || | | || ||||||    
T  45680253 aagttcatcaaatttcgagtgaagtttgctaggagaataacaaatgtgattgctcatactcttgcaagagaggccacattttttgctagtccctttgttt 45680154  T
Q  239 attttcatacaccaaattatattggaattttgattattaat 279  Q
    |||||| || ||| |||| |||||  | |||||||||||||    
T  45680153 attttcgtatacccaattgtattgagactttgattattaat 45680113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 18357106 - 18357203
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagt-aaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttatttt 243  Q
    ||||||| |||||||||||| |||| || |||  ||| | |||||||||| |||||||||||||  |||||||  |||| ||||||||||||||||||    
T  18357106 caactctagggtggagtttgttaggtgataagccaaacgggattgctcatgctcttgcaggagaagccacgttactagctaattccgttgtttatttt 18357203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 53437536 - 53437597
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggaga 209  Q
    |||||| |||||||||||| |||||||||||| |||| |||||||||| |||||||| ||||    
T  53437536 aactctagggtggagtttgttaggagacaagtcaatgcgattgctcatgctcttgcaagaga 53437597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 49499409 - 49499486
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagc 224  Q
    ||||||| ||||||||||||||||| |||||| |||||||  |||||||  ||||||| ||||  |||||||| ||||    
T  49499409 caactctagggtggagtttgctaggcgacaagcaaatgtggctgctcatgttcttgcaagagaagccacgtttctagc 49499486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 53394835 - 53394896
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggaga 209  Q
    |||||| |||||||||||  |||||||||||| |||| | |||||||| |||||||| ||||    
T  53394835 aactctagggtggagttttttaggagacaagtgaatgcggttgctcatgctcttgcaagaga 53394896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 989 - 1170
Alignment:
Q  26 aatatcgactttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaattaggtaatattatcacggcttcccggt 125  Q
    ||||| || |||||||| || ||||||||||| ||||  |   ||||||  ||| ||||||||||  ||||||| || || ||||||||||||| || ||    
T  989 aatattgattttgaagtcgactccaaaaccacaaaagacgctctttactcgggtcgggaagacataactgaatttggcaacattatcacggctttccagt 1088  T
Q  126 tctt-ctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcagg 206  Q
      || ||||| |||||||| | |||||||||||||||||||| | || ||||||  |||||| | ||||| ||||| |||||    
T  1089 ctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcagg 1170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 279
Target Start/End: Complemental strand, 54027854 - 54027711
Alignment:
Q  136 tccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttg 235  Q
    |||||||| | ||||||| |||||||||||  |||| ||||||  |||||| | ||||| ||||||| ||| ||  |||| ||| | || | | ||| |     
T  54027854 tccaagtttaccaactctagggtggagttttttaggcgacaagctaatgtggtggctcacactcttgtaggggaagccacatttctcgctactcccgcta 54027755  T
Q  236 tttattttcatacaccaaattatattggaattttgattattaat 279  Q
    |||||||||||| ||| |||||||||| || |||||||||||||    
T  54027754 tttattttcatatacccaattatattgaaactttgattattaat 54027711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 299
Target Start/End: Original strand, 12355110 - 12355375
Alignment:
Q  35 tttgaagttgattccaaaaccacgaaagttggcatttactgaggtagggaagacatctctgaattaggtaatattatcacggcttcccggttctt-ctct 133  Q
    |||||||| || || |||||||| |||| |||  |||| |  ||| ||||||||||  | ||||| || ||||| ||||| |||||||||| ||| || |    
T  12355110 tttgaagtcgactctaaaaccacaaaagatggtctttattcgggtcgggaagacataacggaatttggaaatatcatcacagcttcccggtccttgcttt 12355209  T
Q  134 cttccaagttcaacaactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgt 233  Q
      |||||||| | ||||||| |||||||||||| |||| ||||||  |||||| | ||||| |||||| ||   || ||||| ||| | || | | ||      
T  12355210 tgtccaagtttaccaactctagggtggagtttgttaggcgacaaggtaatgtggtggctcacactcttccaaaggaaaccacatttctcgctagtcccac 12355309  T
Q  234 tgtttattttcatacaccaaattatattggaattttgattattaataatatgcaataagcaccttt 299  Q
    | | |||||||||| ||| |||| ||||| || ||||||||||||| | ||||  |||||||||||    
T  12355310 tatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctttaagcaccttt 12355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 243
Target Start/End: Complemental strand, 37061190 - 37061094
Alignment:
Q  147 caactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttatttt 243  Q
    ||||||| ||||||||||||||||| |||||  ||||||| ||||||||   |||||| ||||  ||| |||| |||| | | ||||||||||||||    
T  37061190 caactctagggtggagtttgctaggtgacaaacaaatgtggttgctcatgtgcttgcaagagaagccatgtttctagctagtcccgttgtttatttt 37061094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 295
Target Start/End: Original strand, 18878174 - 18878321
Alignment:
Q  148 aactctcgggtggagtttgctaggagacaagtaaatgtgattgctcatactcttgcaggagagaccacgtttgtagccaattccgttgtttattttcata 247  Q
    |||||| |||||||||||| |||| ||||||| ||||   |||||||| || ||||| ||||| |||||||| |||| |||  ||| ||||||| | |||    
T  18878174 aactctagggtggagtttgttaggcgacaagtcaatgcagttgctcatgcttttgcacgagaggccacgtttttagctaatctcgtcgtttattatgata 18878273  T
Q  248 caccaaattatattggaattttgattattaataatatgcaataagcac 295  Q
     ||| | || ||||| || | | ||||||||| | |||| ||||||||    
T  18878274 tacccacttgtattgaaactattattattaatgaaatgctataagcac 18878321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University