View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_11 (Length: 475)
Name: NF15906_low_11
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 220 - 464
Target Start/End: Complemental strand, 20689304 - 20689059
Alignment:
| Q |
220 |
ctttctgagctagttaataagtaaggaatgtaaatatgggaatatgtggaactaaacattgagagagtgtttaagggagattgtgtgagcaagttgtagt |
319 |
Q |
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| T |
20689304 |
ctttttgagctagttaataagttacgaatgtaaatatgggaatatgtggaactaaacattgagagagtgtttaagggagattgtgtgagcaagttgtagt |
20689205 |
T |
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| Q |
320 |
aacattcttcatcaggg-actatgaatatggaaggcgtaaacatttattagcatgggaggaggagcatgtacttgagtgtagtgctttgttgcataatat |
418 |
Q |
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| T |
20689204 |
aacattcttcattaggggactatgaatatggaaggcgtaaacatttattagcatgggaggaggagcatgtacttgagtgtagtgctttgttgcataatat |
20689105 |
T |
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| Q |
419 |
tgtgttgaatgtgggggtgttagataggtggcagtggaatattcat |
464 |
Q |
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| T |
20689104 |
tgtgttgaatgtgggggtgtcagataggtggcagtggaatattcat |
20689059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 20689507 - 20689371
Alignment:
| Q |
17 |
tgaacattcgcaaacaaggacttcttgttgtagtatatgtcgaagactgggataagtttcggaggaggaggcagtggaggatttccaactgactgtgtag |
116 |
Q |
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| T |
20689507 |
tgaaccttcgcaaacaaggacttcttgttgtagtatatgtcgaagacagggataagttttggaggagaaggtgatggaggatttccaactgactgtgtag |
20689408 |
T |
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| Q |
117 |
tccatgttttgttttcattgaagtgatggtttgcagc |
153 |
Q |
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| T |
20689407 |
tccatgttttgttttcattgaagtgatggtttgcagc |
20689371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 448
Target Start/End: Original strand, 36564128 - 36564204
Alignment:
| Q |
372 |
tgggaggaggagcatgtacttgagtgtagtgctttgttgcataatattgtgttgaatgtgggggtgttagataggtg |
448 |
Q |
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| T |
36564128 |
tgggaggaggagcaggttcaggagtgtagtgcattgttacataatattgtgatgcaggttggtgtgttagacaggtg |
36564204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 425
Target Start/End: Original strand, 2856502 - 2856564
Alignment:
| Q |
363 |
ttattagcatgggaggaggagcatgtacttgagtgtagtgctttgttgcataatattgtgttg |
425 |
Q |
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| T |
2856502 |
ttattagcttgggaggaggagcaggttcaggagtgtagtgctttgttgcttaaaattgtgttg |
2856564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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