View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_13 (Length: 449)
Name: NF15906_low_13
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 39777580 - 39777166
Alignment:
| Q |
17 |
atttcgaagtttatcccgtaacagaactttgctgctagttcaaatgcttctgatccaccagggacatcgatgagttcaattaatggaacatcatcaacag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39777580 |
atttcgaagtttatcccgtaacagaactttgctgctagttcaaatgcttctgatccaccagggacatcgatgagttcaattaatggaacatcatcaacag |
39777481 |
T |
|
| Q |
117 |
catcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaataattcaataaaca |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39777480 |
catcactagattctgaaatgagcttccttatgtatccactttttgaaattaatggaaactgcaaattacgttagagttatgaaaaataattcaataaaca |
39777381 |
T |
|
| Q |
217 |
gcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgatnnnnnnnnnnnnnnnnnnntactaagaattgcatgaacaacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39777380 |
gcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgataaaaaaagaaaaaagaaaatactaagaattgcatgaacaacc |
39777281 |
T |
|
| Q |
317 |
aatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaaccaagtactagaattc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39777280 |
aatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaaccaagtactagaattc |
39777181 |
T |
|
| Q |
417 |
attactctccattta |
431 |
Q |
| |
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||||||||||||||| |
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| T |
39777180 |
attactctccattta |
39777166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 367
Target Start/End: Complemental strand, 1381263 - 1381228
Alignment:
| Q |
332 |
ctaaatagatcaaacgacatcataatgttgtatcat |
367 |
Q |
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| T |
1381263 |
ctaaatagatcaaacgacatcataatgttatatcat |
1381228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 47798563 - 47798759
Alignment:
| Q |
17 |
atttcgaagtttatcccgtaacagaactttgctgctagttcaaatgcttctgatccaccagggacatcgatgagttcaattaatggaacatcatcaacag |
116 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||||||||| |||||| |
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| T |
47798563 |
atttcaaagtttatccagtaacagaactttgctgctagttcaaatgtttctgatccaccagagacgtcaatgagttcaattaatggaacatcagcaacag |
47798662 |
T |
|
| Q |
117 |
catcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaataattcaataa |
213 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47798663 |
cattactagattctgaaatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattacattagagttatgaaaaataattcaataa |
47798759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 436
Target Start/End: Original strand, 47798862 - 47798985
Alignment:
| Q |
313 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaaccaagtactaga |
412 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||||| |||||| |
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| T |
47798862 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
47798961 |
T |
|
| Q |
413 |
attcattactctccatttaatgat |
436 |
Q |
| |
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| |||||||||||||||||||||| |
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|
| T |
47798962 |
aatcattactctccatttaatgat |
47798985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 5677831 - 5677906
Alignment:
| Q |
20 |
tcgaagtttatcccgtaacagaactttgctgctagttcaaatgcttctgatccaccagggacatcgatgagttcaa |
95 |
Q |
| |
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||||| ||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
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| T |
5677831 |
tcgaaatttataccgtagcagaattttgctgctagttcaaatgcttctgctccaccaggaacatcggagagttcaa |
5677906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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