View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_14 (Length: 444)
Name: NF15906_low_14
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 9568242 - 9568678
Alignment:
| Q |
1 |
ggacctaacaatgaaatctccgattccttaaagccttgctctgaaatcatttcatcaatatgaaactcattatcttgagatctcccttggtgaaggctac |
100 |
Q |
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| T |
9568242 |
ggacctaacaatgaaatctccgattccttaaagccttgctctgaaatcatttcatcaatatgaaactcattatcttgagatgtcccttggtgaaggctac |
9568341 |
T |
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| Q |
101 |
catttgagttggacagacagctgccgaatacttctatatcggtacctaccaatgaaagctcaatttctttcattttaaattcaaagctgtcatcgtccgc |
200 |
Q |
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| T |
9568342 |
catttgagttggacagacagctgccgaatacttctatatcggtacctaccagtgaaagctcaatttctttcattttaaattcaaagctgtcatcatccgc |
9568441 |
T |
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| Q |
201 |
actagagtaaacacctaacggcgatacatttgtggtgttgtcagaggagcaatagtgagaaatttgtggtgaaaaagtacttctgatgttgaatggatca |
300 |
Q |
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| T |
9568442 |
actagagtaaacacctaacggcgatacatttgtggtgttgtcagaggagcaatagcgagaaatttgtggtgaaaaagtacttctcatgttgaatggatca |
9568541 |
T |
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| Q |
301 |
ccactagcagatgaaggagaatcaaaagctatgacatcattggctacttgagaagattccaaggtacagaattgct------------tctcccagttgc |
388 |
Q |
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| T |
9568542 |
ccactagcagatgaaggagaatcaaaagctatgacatcattggctacttgagaagattccaaggtacagaattgcttctcccagttgctctcccagttgc |
9568641 |
T |
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| Q |
389 |
ttgtttccaaagaaacattggttctttgccttctacc |
425 |
Q |
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| T |
9568642 |
ttgtttccaaagaaacattggttctttgccttctacc |
9568678 |
T |
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