View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_15 (Length: 428)
Name: NF15906_low_15
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 60 - 406
Target Start/End: Complemental strand, 26080491 - 26080146
Alignment:
| Q |
60 |
atcgtcacaaatttcaatgcagcttaccagaggggaagggacaagaaatgttaccaaatatacccttttaaatctgactcatcagttaaacaaattaaat |
159 |
Q |
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| T |
26080491 |
atcgtcacaaatttcaatgcagcttaccagaggggaagggacaagaaatgttaccaaatatacccttttaaatctgactcatcagttaaacaaattaaat |
26080392 |
T |
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| Q |
160 |
ctaatggtaaataagtgatggaggaccggtacacccttttacataggtatgccttaaatgtggcctaaaaaacattctattactctaaattatgtttagc |
259 |
Q |
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| T |
26080391 |
ctaatggtaaataagtgatggag-atcggtacacccttttacataggtatgccttaaatgtggcctaaaaaacattctattactctaaattatgtttagc |
26080293 |
T |
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| Q |
260 |
atattcaccatgcgattctgtcatagttcaaactgaatattcatgcaactttagcataatgaggcccaaccacaaccctataagaataacagttctcatg |
359 |
Q |
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| T |
26080292 |
atgttcaccatgcgattctgtcacagttcatactgaatattcatgcaactttagcataatgaggcccaaccacaaccctataagaataacagttctcatg |
26080193 |
T |
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| Q |
360 |
cgtcagttgcatacaatcgttgagctctcagaattttggataggtct |
406 |
Q |
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| T |
26080192 |
tgtcagttgcatacaatcgttgagctctcagaattttggataggtct |
26080146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 26080532 - 26080489
Alignment:
| Q |
10 |
atgtccaagaaaatgctgttatag--taggagatatgaaaaatc |
51 |
Q |
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| T |
26080532 |
atgtacaagaaaatgctgttatagtataggagatatgaaaaatc |
26080489 |
T |
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