View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_16 (Length: 411)
Name: NF15906_low_16
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 14249902 - 14250293
Alignment:
| Q |
6 |
agagagaagaaattaaattacttaatgcgtcatctcatttatcgtagtaaaacgaataaatagaaaaaataatttcattaacatcatacaactttgagat |
105 |
Q |
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| T |
14249902 |
agagagaagaaattaaattacttaatgcgtcatctcatttatcgtagtaaaacgaataaatagaaaaaataatttcattaacatcatacaactttgagat |
14250001 |
T |
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| Q |
106 |
gttcttgttcatttttgaatttcatagactaaaatttacaacccttattattttagagactaaataagtgatttactctaaattaagctctcaagtgaat |
205 |
Q |
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| T |
14250002 |
gttcttgttcatttttgaatttcatggactaaaatttacaacccttatcattttagggactaaataagtgatttactctaaattaagctctcaagtgaat |
14250101 |
T |
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| Q |
206 |
gatcctcgtgagtctaattcaattgataaagataatgcattataatatatgagtcagagttgaaatctcacatttctcacttaaccaccttaaagatgaa |
305 |
Q |
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| T |
14250102 |
gatcctcgtgagtctaattcaattgataaagataatgtattataatatatgagtcagagttgaaatctcatatttctcacttaaccaccttaaagatgaa |
14250201 |
T |
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| Q |
306 |
attataatcatcagagtacttga--cnnnnnnnctcacaacctcttaaaacaaaaaagttcttaaccaaataattccctatgataaaaagat |
395 |
Q |
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| T |
14250202 |
attataatcatcagagtacttgacccaaaaaaactcacaacctcttaaaacaaaaaagttcttaaccaaataattccgtatgataaaaagat |
14250293 |
T |
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