View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_18 (Length: 362)
Name: NF15906_low_18
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 45403264 - 45402928
Alignment:
| Q |
19 |
gtggcagctagagagactctccaagaacgtagagaagctattgagagaggaaaattgaagggccgaagactttttgattcaaccatggagagtgagagtg |
118 |
Q |
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| T |
45403264 |
gtggcagctagagagactctccaagaacgtagagaagctattgagagaggaaaattgaagggccgaagactttttgattcaaccatggagagtgagagtg |
45403165 |
T |
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| Q |
119 |
atgataacgacaacaacataggtcaaaagtatgaagtgaggtcaatgtctttttgttacttggaggatgaacatgagcatgagaatgaatcgttgtcttc |
218 |
Q |
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| T |
45403164 |
atgataacgacaacaacataggtcaaaattatgaagtgaggtcaatgtctttttgttacttggaggatgaacatgagcatgagaatgaatcgttgtcttc |
45403065 |
T |
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| Q |
219 |
ttctttgtctcctattggtgattttgtggacaaggatatggtgactaacgtagcagatattaaagttgggagtaagtctaggtttgctaatggaacaagg |
318 |
Q |
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| T |
45403064 |
ttctttgtctcctattggtgattttgtggacaaggatatgatgactaacgtagcagatattaaagttgggagtaagtctaggtttgctaatggaacaagg |
45402965 |
T |
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| Q |
319 |
tatgttgttttcttaggtgggtttgttgcctttgctt |
355 |
Q |
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| T |
45402964 |
tatgttgttttcttaggtgggtttgttgcctttgctt |
45402928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 45402124 - 45402087
Alignment:
| Q |
306 |
taatggaacaaggtatgttgttttcttaggtgggtttg |
343 |
Q |
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| T |
45402124 |
taatggaacaaggtatgttgtttacttaggttggtttg |
45402087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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