View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_19 (Length: 352)
Name: NF15906_low_19
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 8352288 - 8351962
Alignment:
| Q |
13 |
aatattcgaggatcaaaatgactaatattagagagatttggtgt------actcatagcttcgtggatttggttaaactcagcctaattaagcagtggtt |
106 |
Q |
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| T |
8352288 |
aatattcgaggatcaaaatgacaaattttaaagagatttggtgtgcttgtactcatagcttcttgaatttggttaaactgagcctagttaagcagtggtt |
8352189 |
T |
|
| Q |
107 |
atctcatacctggtttgttctattgaaccgtttctataaaattttcattgagcattaagctgtgattaccaacaaaagggtctctttggttgttctttgg |
206 |
Q |
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| T |
8352188 |
atctcatacctggtttgttctattgaaccgtttctatgaaattttcattgagcattaagcagtgattactaacaaaagggcctctttggttgttctttgg |
8352089 |
T |
|
| Q |
207 |
taagttttattatgttcatgtttatagcacctatatatgatccaaacttatgcttattgaaataatcgttgtaataatttactttggctacataagctga |
306 |
Q |
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| T |
8352088 |
taagttttattatgttcatgtttatagcacctatatatgattcaaacttatgcttattgaaataatcgttgtaataatttactttggctacataagc--- |
8351992 |
T |
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| Q |
307 |
ttttattttgtacgaatatcatagaagtttt |
337 |
Q |
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| T |
8351991 |
-tttattttgtacgaatatcatagaagtttt |
8351962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 51 - 295
Target Start/End: Complemental strand, 8365699 - 8365442
Alignment:
| Q |
51 |
tggtgtactcatagcttcgtggatttggttaaactcagcctaattaagcagtggttatctcatacctggtttgttctattgaaccgtttctataaaattt |
150 |
Q |
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| T |
8365699 |
tggtgtactcgtagcttcttggaattggttaaactcagcctagttaagcagcggttacctcatacctggtttgttctgttgaactgtttctatgagattt |
8365600 |
T |
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| Q |
151 |
tcattgag--------------cattaagctgtgattaccaacaaaagggtctctttggttgttctttggtaagttttattatgttcatgtttatagcac |
236 |
Q |
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| T |
8365599 |
taatcgaggtacctgtttgatgcattac-ctgtggataccaacaaaagggcctctttgattgttctttggtaagttttattatgttgatgtttatagcac |
8365501 |
T |
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| Q |
237 |
ctatatatgatccaaacttatgcttattgaaataatcgttgtaataatttactttggct |
295 |
Q |
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| T |
8365500 |
ctatatatgatccaaacttatgcttattgaaataattgttgttataatttactttggct |
8365442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 292
Target Start/End: Complemental strand, 8357230 - 8357098
Alignment:
| Q |
161 |
ttaagctgtgattaccaacaaaagggtctctttggttgttct-ttggtaagttttattatgttcatgtttatagcacctatatatgatccaaacttatgc |
259 |
Q |
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|||||| ||| ||||||||||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
8357230 |
ttaagcagtggttaccaacaaaagggcctctttgattgttctgttgcaaagttttattatgttcatgtttatagcacctatgtatgatctgaacttatgc |
8357131 |
T |
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| Q |
260 |
ttattgaaataatcgttgtaataatttactttg |
292 |
Q |
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| T |
8357130 |
ttatttaaattatcgttgttataatttactttg |
8357098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 8357273 - 8357217
Alignment:
| Q |
51 |
tggtgtactcatagcttcgtggatttggttaaactcagcctaattaagcagtggtta |
107 |
Q |
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| T |
8357273 |
tggtgtactcatagcttcttggatttggttaaacttagcctagttaagcagtggtta |
8357217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 8365866 - 8365828
Alignment:
| Q |
14 |
atattcgaggatcaaaatgactaatattagagagatttg |
52 |
Q |
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| T |
8365866 |
atattcgaggaccaaaatgactaatattagagaaatttg |
8365828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 8357434 - 8357402
Alignment:
| Q |
20 |
gaggatcaaaatgactaatattagagagatttg |
52 |
Q |
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| T |
8357434 |
gaggaccaaaatgactaatattagagagatttg |
8357402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 7287022 - 7287122
Alignment:
| Q |
194 |
ggttgttctttggtaagttttattatgttcatgtttatagcacctatatatgatccaaacttatgcttattgaaataatcgttgtaataatttactttgg |
293 |
Q |
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||||||||||| ||||||| | | |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7287022 |
ggttgttcttttgtaagttctctgttgttgatgtttataacacctatatatgatctgaacttatgcttattgaaataatcgttgtaataatttacattgg |
7287121 |
T |
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| Q |
294 |
c |
294 |
Q |
| |
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| |
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| T |
7287122 |
c |
7287122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 974512 - 974442
Alignment:
| Q |
203 |
ttggtaagttttattatgttcatgtttatagcacctatatatgatccaaacttatgcttattgaaataatc |
273 |
Q |
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| T |
974512 |
ttggtaagttctatgccgttgatgtttatagcacgaatatatgatccgaactaatgcttattgaagtaatc |
974442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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