View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15906_low_2 (Length: 639)
Name: NF15906_low_2
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_2 |
 | |
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| [»] chr8 (3 HSPs) |
| |
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| [»] chr1 (10 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold1532 (2 HSPs) |
| | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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| [»] scaffold1838 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 10 - 639
Target Start/End: Complemental strand, 42079353 - 42078724
Alignment:
| Q |
10 |
cgaagaaaatgagctcctggaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagtaccaaaaccaatacttc |
109 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079353 |
cgaacaaaatgagctcctagaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagtaccaaaaccaatacttc |
42079254 |
T |
|
| Q |
110 |
gttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079253 |
gttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaa-gaaatatgctatgaatattatagaagaaacatgtctattga |
42079155 |
T |
|
| Q |
210 |
atgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataaaggg-agcctctatcatattcaataagatataataatttggttgg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
42079154 |
atgtcaagccaattgatattcacatggatccaaatgtcagacttcaacctaataaaggggagcctctatcagattcaataagatataagaatttggttgg |
42079055 |
T |
|
| Q |
309 |
aaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatttttaattctccttgtcaagaaaacacaaatact |
408 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079054 |
aaaaattgaattatctcacaattactcgtccaaacatttcctttgcagttagtgtggtaagccaatttttaattctccttgtcaagaaaacacaaatact |
42078955 |
T |
|
| Q |
409 |
ttaattcagatttttaaatacatcgaaggtgctccnnnnnnnngccacatttatgaggataaataacatacttagatgctgattgagcaagttcatccat |
508 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42078954 |
ttaattcggattcttaaatacatcgaaggtgctccaaaaacaggccacatttacgaggataaacaacatacttagatgctgattgggcaagttcatccat |
42078855 |
T |
|
| Q |
509 |
tgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaatgtaactgcaagatcaagcgtagag |
608 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42078854 |
tgatagacaatctatttttggatactgtgtatttgttggcggaaacctgatattctggaagggtaagaaacaaaatgtaactgcaagatcaagcgtagag |
42078755 |
T |
|
| Q |
609 |
gtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
42078754 |
gtcgaatatagggtcatgacactagtaacat |
42078724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 109 - 443
Target Start/End: Original strand, 23519737 - 23520071
Alignment:
| Q |
109 |
cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg |
208 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||| | |||||||| |||||||| |
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|
| T |
23519737 |
cgttactttttgggtattgaggtagcccaatccaaggatggtattgtaatttcac-aaaggaaatacgctatggatattcttgaagaaactggtctattg |
23519835 |
T |
|
| Q |
209 |
aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaac-ctaataaagggagcctctatcatattcaataagatataataatttggttg |
307 |
Q |
| |
|
| | ||||||| |||||| || ||||||||||||||||| |||| || |||| ||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
23519836 |
atttccaagccagttgatactcctatggatccaaatgtcaagcttctacaaaaataggaggagcctctatcatattcaggaagatataggagattggtt- |
23519934 |
T |
|
| Q |
308 |
gaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatt-tttaattctccttgtcaagaaaacacaaata |
406 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| |||||| ||||||||||||||| |||||| |||| || |||||| |||| |||||| ||| ||| |
|
|
| T |
23519935 |
gaaaaattgaattatctcacaatccctcgtccaaacattttctttgcagttagtgttgtaagctaattattaaattcttcttgccaagaatacatgaatg |
23520034 |
T |
|
| Q |
407 |
ctttaattcagatttttaaatacatcgaaggtgctcc |
443 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
23520035 |
ttttaattcgaattcttaaatacatcaaaggtgctcc |
23520071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 531 - 639
Target Start/End: Original strand, 23520176 - 23520284
Alignment:
| Q |
531 |
tattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaatgtaactgcaagatcaagcgtagaggtcgaatatagggccatgacac |
630 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
23520176 |
tattgtgtacttgttggaggaaatctgatatcctggaagagtaagaaaccaaatgtagttgcaagatcaagcgttgaggccgaatatagggtcatgacac |
23520275 |
T |
|
| Q |
631 |
tagtaacat |
639 |
Q |
| |
|
||||||||| |
|
|
| T |
23520276 |
tagtaacat |
23520284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 2e-85; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 109 - 639
Target Start/End: Complemental strand, 41489376 - 41488829
Alignment:
| Q |
109 |
cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg |
208 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| | ||||||||| |||||||| |
|
|
| T |
41489376 |
cgttactttttgggtattgatgtagcccaatccaaggatggtattgtaatttcacaaag-gaaatatgctttggatattcttgaagaaacaggtctattg |
41489278 |
T |
|
| Q |
209 |
aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataaaggg-agcctctatcatattcaataagatataataatttggttg |
307 |
Q |
| |
|
|||| |||||| ||||||| || |||||||||||||||||||||| ||||||| ||||| ||||| ||||| ||||| ||||||| | ||||||| |
|
|
| T |
41489277 |
aatgccaagccgattgatactccgatggatccaaatgtcaaacttctacctaatcaaggggagcctttatcagattcaggaagatatggaagattggttg |
41489178 |
T |
|
| Q |
308 |
gaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatt-tttaattctccttgtcaagaaaacacaaata |
406 |
Q |
| |
|
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||| ||| |
|
|
| T |
41489177 |
gaaaa-ttgaattatctcacagtcactcgtccagacatttcctttgcagttagtgtggtaagccaattcttaaattctccttgccaagaacacatgaatg |
41489079 |
T |
|
| Q |
407 |
ctttaattcagatttttaaatacatc-gaaggtgctccnnnnnnnngccacatttatgaggataaataaca----------------tacttagatgctg |
489 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||| | | |||||||||||||||| ||| |||| |||||||| |
|
|
| T |
41489078 |
ctttaattcgaattcttaaatacatcaaaaggtgctccgggaaaaggtctcatttatgaggataaaggacatactcagatagttggttactcagatgctg |
41488979 |
T |
|
| Q |
490 |
attgagcaagttcatccattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaatgtaac |
589 |
Q |
| |
|
| || ||| ||||| |||||||||||| || | || ||| ||||| ||||||||||| ||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
41488978 |
actgggcaggttcacccattgatagacggtccacttctgggtattgcgtacttgttggaggaaacctgatatcctggaagagtaagaaacaaaatgtagt |
41488879 |
T |
|
| Q |
590 |
tgcaagatcaagcgtagaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
|||||||||||| | |||| ||||| | ||||||| ||||||||||| |
|
|
| T |
41488878 |
tgcaagatcaagtgctgaggcagaatacaaggccatggtactagtaacat |
41488829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 110 - 366
Target Start/End: Complemental strand, 29806937 - 29806682
Alignment:
| Q |
110 |
gttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattga |
209 |
Q |
| |
|
||||||| || ||||| |||||||||||||||| |||||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29806937 |
gttactttttgggtatcgaggtagcccaatccatggatggtattatgatttcacaaag-gaaatatgctatgaatattcatgaagaaacatgtctattga |
29806839 |
T |
|
| Q |
210 |
atgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataaag-ggagcctctatcatattcaataagatataataatttggttgg |
308 |
Q |
| |
|
||| ||| ||| |||||| || |||||||||||||||||| ||| ||||||| | | ||||||||||||| |||||| |||||||| | |||||| | |
|
|
| T |
29806838 |
atgccaaaccagttgatactcctatggatccaaatgtcaaatttctacctaatcaggaggagcctctatcagattcaagaagatataggagattggtt-g |
29806740 |
T |
|
| Q |
309 |
aaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggt |
366 |
Q |
| |
|
|||| || |||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29806739 |
aaaatttgaattatctcagagtcactcgtccagacatttcctttgcagttagtgtggt |
29806682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 121 - 367
Target Start/End: Complemental strand, 16477364 - 16477120
Alignment:
| Q |
121 |
ggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaagcca |
220 |
Q |
| |
|
||||||||||||| | ||||||| |||| ||||||||||||||||| ||||| | |||| ||||| | |||||||||| | |||||||| ||||||| |
|
|
| T |
16477364 |
ggtattgaggtagtctaatccaaagatgatattgtaatttcacaaag-gaaatgttgtatgtatattcttgaagaaacatataaattgaatgccaagcca |
16477266 |
T |
|
| Q |
221 |
attgatattcacatggatccaaatgtcaaacttcaacctaataaaggg-agcctctatcatattcaataagatataataatttggttggaaaaattaaat |
319 |
Q |
| |
|
||||||| ||| |||| ||||||||| |||| ||||||| | ||| | ||||||||| || || |||||||| | |||||||||| | |||||| |
|
|
| T |
16477265 |
attgatactcatgcggatgtaaatgtcaatcttctacctaatcagggggatcctctatcagat-caggaagatataggagattggttggaaga-ttaaat |
16477168 |
T |
|
| Q |
320 |
tatctcacaatcactcgtccagacatttcctttgcagttagtgtggta |
367 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
16477167 |
tatctcacaatcactcgttcatacatttcctttgcagttagtgtggta |
16477120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 484 - 639
Target Start/End: Complemental strand, 45434076 - 45433921
Alignment:
| Q |
484 |
atgctgattgagcaagttcatccattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaa |
583 |
Q |
| |
|
|||||||||| ||| | ||| | |||||||||| ||||| || ||| ||||||||||||||||| ||||| ||| ||| ||||||| |||||||||| || |
|
|
| T |
45434076 |
atgctgattgggcaggctcacctattgatagacgatctacttctgggtattgtgtacttgttgggggaaacctggtatcctggaagagtaagaaacagaa |
45433977 |
T |
|
| Q |
584 |
tgtaactgcaagatcaagcgtagaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||| ||| |||||||||||| |
|
|
| T |
45433976 |
tgtaattgcaagatcaagcgttgaggcagaatatagggctatggcactagtaacat |
45433921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 105 - 389
Target Start/End: Complemental strand, 45434471 - 45434187
Alignment:
| Q |
105 |
acttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtct |
204 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| ||||||||| | ||||| |||||| | |||||||||||| ||||| | |||||||||||||| |
|
|
| T |
45434471 |
acttcgttattttttgggtattgaggtagcccaatctaaggatggtctagtaatatcacaacga-aaatatgctatggatattcttgaagaaacatgtct |
45434373 |
T |
|
| Q |
205 |
attgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaat-aaagggagcctctatcatattcaataagatataataatttg |
303 |
Q |
| |
|
||||| | ||||||| |||||| || |||||||| ||||||||||||| ||| ||| | ||||| | |||| ||||| || |||| | ||| |
|
|
| T |
45434372 |
tttgaacgccaagccagttgatactcctatggatcctaatgtcaaacttctacccaatcatggggagtcgttatctgattcagggaggtataggagattg |
45434273 |
T |
|
| Q |
304 |
gttggaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatt-tttaattctccttg |
389 |
Q |
| |
|
||||| ||||| ||||| || ||| |||||||||| ||||||| ||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
45434272 |
gttgg-gaaattgaattaccttacagtcactcgtccgaacatttcgtttgcggttagtgtggtaagccaattcttaaattctccttg |
45434187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 506 - 639
Target Start/End: Complemental strand, 29806542 - 29806409
Alignment:
| Q |
506 |
cattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaatgtaactgcaagatcaagcgta |
605 |
Q |
| |
|
||||||||||| ||| |||| ||| | ||||||| ||||| | ||||| ||||| | ||| ||| |||||||||||||| ||| || |||||||||||| |
|
|
| T |
29806542 |
cattgatagacgatccatttatgggtgttgtgtatttgttagaggaaacctgatgtcctgaaagagtaagaaacaaaatataattgtaagatcaagcgtt |
29806443 |
T |
|
| Q |
606 |
gaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| |
|
|
| T |
29806442 |
gaggcagaatatagggccataacactagtaacat |
29806409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 639
Target Start/End: Complemental strand, 16476983 - 16476832
Alignment:
| Q |
488 |
tgattgagcaagttcatccattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaatgta |
587 |
Q |
| |
|
|||||| ||| ||||| |||||||||||| ||| | || || ||||| |||||| |||| ||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
16476983 |
tgattgggcaggttcacccattgatagacgatccacttcagggtattgcgtactttttggaggaaacctgatatcatggaagagtaagaaacaaaatgta |
16476884 |
T |
|
| Q |
588 |
actgcaagatcaagcgtagaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| | |||||||||| |
|
|
| T |
16476883 |
tttgcaagatcaagcgctgaagcataatatagggccatgtccctagtaacat |
16476832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 29806682 - 29806621
Alignment:
| Q |
382 |
tctccttgtcaagaaaacacaaatactttaattcagatttttaaatacatcgaaggtgctcc |
443 |
Q |
| |
|
|||||||| |||||| ||| ||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
29806682 |
tctccttgccaagaacacatgaatgctttaatttggattcttaaatacatcgaaggtgctcc |
29806621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 382
Target Start/End: Complemental strand, 32938588 - 32938508
Alignment:
| Q |
301 |
ttggttggaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatttttaatt |
382 |
Q |
| |
|
|||||||||||| || || ||||||| | |||||| |||| | |||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
32938588 |
ttggttggaaaa-ttgaactatctcatagtcactcttccaaatattttctttatagttagtgtggtaagccattttttaatt |
32938508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 482 - 598
Target Start/End: Complemental strand, 22097273 - 22097157
Alignment:
| Q |
482 |
agatgctgattgagcaagttcatccattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaa |
581 |
Q |
| |
|
||||||||| ||| || ||| |||||||||||| ||||| |||||| | || | ||||| |||| | ||||| ||||||| | ||| ||||||| ||| |
|
|
| T |
22097273 |
agatgctgactgaacaggttaatccattgataggcaatccatttttaggtaatatgtacatgttagaggaaacctgatatccaaaaagagtaagaagcaa |
22097174 |
T |
|
| Q |
582 |
aatgtaactgcaagatc |
598 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
22097173 |
aatgtagttgcaagatc |
22097157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 105 - 639
Target Start/End: Original strand, 19126448 - 19127007
Alignment:
| Q |
105 |
acttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtct |
204 |
Q |
| |
|
|||| ||||||| || ||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
19126448 |
acttagttactttttgggtattgagatagctcaatccaaggatggtgttgtaatttcacaagg-gaaatatgctatgaatattcttgaagaaacatgtct |
19126546 |
T |
|
| Q |
205 |
attgaatgtcaagccaattgatattc-------ac-atggatccaaatgtcaaacttcaacctaataaaggg-agcctctatcatattcaataagatata |
295 |
Q |
| |
|
|||||||| |||||||||||||| || || |||||||||||||||||| ||| ||||||| | ||| ||||||| | ||||||| |||||||| |
|
|
| T |
19126547 |
attgaatgccaagccaattgatactcctatggtactatggatccaaatgtcaaatttctacctaatcagggggagcctctgtaatattcaggaagatata |
19126646 |
T |
|
| Q |
296 |
ataatttggttggaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatttttaa-ttctccttgtcaag |
394 |
Q |
| |
|
| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||| |
|
|
| T |
19126647 |
ggagattggttggaaaa-ttgaattatctcacagtcactcgtccagacatttcctttgcagttagtgtagtaagccaattcttaatttctcctttccaag |
19126745 |
T |
|
| Q |
395 |
aaaacacaaatactttaattcagatttttaaatacatcgaaggtgctccnnnnnnnngccacatttatgaggataaataaca-----------------t |
477 |
Q |
| |
|
|| ||| ||| ||||||||| ||| ||||||||||| |||||||||| | | |||||||||||||||| ||| | |
|
|
| T |
19126746 |
aacacatgaatgctttaattcgaattcttaaatacatcaaaggtgctccaggaaaatgtctcatttatgaggataaaggacatactcagataggttggtt |
19126845 |
T |
|
| Q |
478 |
acttagatgctgattgagcaagttcatccattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaa |
577 |
Q |
| |
|
||| |||| |||| | ||| |||| ||||||||| || ||| | || ||| ||||||||||||||| | ||||| ||| |||| |||||| ||||||| |
|
|
| T |
19126846 |
actcagatcctgactaggcaggttcgcccattgataaacgatccacttatgggtattgtgtacttgtttgaggaaacctgttattttggaagagtaagaa |
19126945 |
T |
|
| Q |
578 |
acaaaatgtaactgcaagatcaagcgtagaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
|||||||||| ||||||||||||| | || | |||||||||| ||||||||||||||||| |
|
|
| T |
19126946 |
acaaaatgtagttgcaagatcaagctttgatgcagaatatagggtcatgacactagtaacat |
19127007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 639
Target Start/End: Complemental strand, 14156995 - 14156839
Alignment:
| Q |
483 |
gatgctgattgagcaagttcatccattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaa |
582 |
Q |
| |
|
||||||||||| ||| | ||| | |||||||||| ||||| || | | ||||||||||||||||| ||||| ||| ||| ||||||| |||||||||||| |
|
|
| T |
14156995 |
gatgctgattgggcaggctcacctattgatagacgatctacttctaggtattgtgtacttgttgggggaaacctggtatcctggaagagtaagaaacaaa |
14156896 |
T |
|
| Q |
583 |
atgtaactgcaagatcaagcgtagaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||| ||| |||||||||||| |
|
|
| T |
14156895 |
atgtagttgcaagatcaagcgctgaggcagaatatagggctatggcactagtaacat |
14156839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 105 - 396
Target Start/End: Complemental strand, 14166276 - 14165985
Alignment:
| Q |
105 |
acttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtct |
204 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| ||||||||| | ||||| |||||| | |||||||||||| ||||| | ||||||||| |||| |
|
|
| T |
14166276 |
acttcgttattttttgggtattgaggtagcccaatctaaggatggtctagtaatatcacaacga-aaatatgctatggatattcttgaagaaacaggtct |
14166178 |
T |
|
| Q |
205 |
attgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaat-aaagggagcctctatcatattcaataagatataataatttg |
303 |
Q |
| |
|
||||| | ||||||| |||||| || || | ||| ||||||||||||| ||| ||| | ||||||| |||| ||||| || |||| | || |
|
|
| T |
14166177 |
tttgaacgccaagccagttgatactcctattgttcctaatgtcaaacttctacccaatcagggggagccgttatctgattcagggaggtataggagagtg |
14166078 |
T |
|
| Q |
304 |
gttggaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatt-tttaattctccttgtcaagaa |
396 |
Q |
| |
|
||||| ||||| ||||| || ||| |||||||||| || ||||| |||||||||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
14166077 |
gttgg-gaaattgaattaccttacagtcactcgtccggaaatttcgtttgcagttagtgtggtaagccaattcttaaattctccttgccaagaa |
14165985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 106 - 485
Target Start/End: Complemental strand, 20187605 - 20187227
Alignment:
| Q |
106 |
cttcgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtcta |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||| | |||| |||||||||| |
|
|
| T |
20187605 |
cttcgttactttctaggtattgaggtagcccaatccaaggatgatattgtaagttcac-aaaggaaatatgctatggttattcttgaagtaacatgtcta |
20187507 |
T |
|
| Q |
206 |
ttgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaa-taaagggagcctctatcatattcaataagatataataatttgg |
304 |
Q |
| |
|
||||||| ||| ||||||||| ||| ||| ||||||||||||||| || |||||| || |||||||||||||| ||| |||||||| | |||| |
|
|
| T |
20187506 |
ttgaatgctaagtcaattgatactcatatgaatccaaatgtcaaacgtctacctaattagggggagcctctatcaggttcgggaagatatatgagattgg |
20187407 |
T |
|
| Q |
305 |
ttggaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatt-tttaattctccttgtcaagaaaacacaa |
403 |
Q |
| |
|
|||| |||||| ||||||||||| ||| |||||||| |||||| |||||||||||||||||||| |||||| || |||||||| || |||||| ||| | |
|
|
| T |
20187406 |
ttgg-aaaattgaattatctcac-atcgctcgtccaaacattttctttgcagttagtgtggtaaaccaattcttaaattctccctgccaagaacacatga |
20187309 |
T |
|
| Q |
404 |
atactttaattcagatttttaaatacatcgaaggtgctccnnnnnnnngccacatttatgaggataaataacatacttagat |
485 |
Q |
| |
|
|| |||||||| |||||| ||||||||| | | |||||| ||| |||||||||||||||| ||||||| |||| |
|
|
| T |
20187308 |
atgctttaattatgattttaaaatacatcaacgatgctccatggaaatgcctcatttatgaggataaaagacatactcagat |
20187227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 531 - 603
Target Start/End: Complemental strand, 20187161 - 20187089
Alignment:
| Q |
531 |
tattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaatgtaactgcaagatcaagcg |
603 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| | |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
20187161 |
tattgtctacttgttggaggaaatctgatattgtagaagtgtaagaaacaaaatgtagttgcaagatcaagcg |
20187089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 6739032 - 6739172
Alignment:
| Q |
121 |
ggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattgaatgtcaagcca |
220 |
Q |
| |
|
|||||||||||| |||||||||| |||||| || |||| | | | ||||||||||| ||| ||||| | ||||||||||||||||| |||||||| || |
|
|
| T |
6739032 |
ggtattgaggtaacccaatccaatgatggtcttctaatatga-agaaagaaatatgttatagatattcttgaagaaacatgtctatttaatgtcaa-aca |
6739129 |
T |
|
| Q |
221 |
attgatattcacatggatccaaatgtcaaacttcaacctaata |
263 |
Q |
| |
|
|||||| || || |||||||||||||| ||| |||||||| |
|
|
| T |
6739130 |
gttgatactcttataaatccaaatgtcaaaattctacctaata |
6739172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 191 - 639
Target Start/End: Original strand, 55255570 - 55256035
Alignment:
| Q |
191 |
gaagaaacatgtctattgaatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataaaggg-agcctctatcatattcaataa |
289 |
Q |
| |
|
||||||||| || ||||||||| ||||||| |||||| || ||||||| ||||||||||||| |||| || | ||| ||||| ||||| ||| | || |
|
|
| T |
55255570 |
gaagaaacaggtatattgaatgccaagccagttgatactcctatggatctaaatgtcaaacttgtaccttatcagggggagcctttatcagatttaggaa |
55255669 |
T |
|
| Q |
290 |
gatataataatttggttggaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatttttaa-ttctcctt |
388 |
Q |
| |
|
|||||| | |||||||||||| || |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||| || |
|
|
| T |
55255670 |
gatataggagattggttggaaaa-ttgaattatctcacagtcactcgtccaaacatttcctttgtagttagtgtggtaagccaattcttaaattctcttt |
55255768 |
T |
|
| Q |
389 |
gtcaagaaaacacaaatactttaattcagatttttaaatacatcgaaggtgctccnnnnnnnngccacatttatgaggataaataacatacttagat--- |
485 |
Q |
| |
|
| |||||| ||| ||| ||||||||| ||| ||||||||||| |||||||||| | | |||||||||||||||| ||||||| |||| |
|
|
| T |
55255769 |
gccaagaacacatgaatgctttaattcgaattcttaaatacatcaaaggtgctccgggaaaaggtctcatttatgaggataaaggacatactcagatagt |
55255868 |
T |
|
| Q |
486 |
-------------gctgattgagcaagttcatccattgatagacaatctatttttggatattgtgtacttgttggcggaaatctgatattctggaagggt |
572 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| ||| | || ||| ||||||||||||||||| ||||| |||| || ||||||| || |
|
|
| T |
55255869 |
tggttactcagatgctgattgggcacgttcacccattgatagatgatccacttctgggtattgtgtacttgttggaggaaacctgacatcctggaagagt |
55255968 |
T |
|
| Q |
573 |
aagaaacaaaatgtaactgcaagatcaagcgtagaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
55255969 |
aagaaacaaaatgtagttgcaagatcaagcgctgaggcagaatatagggccatggcactagtaacat |
55256035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 109 - 396
Target Start/End: Complemental strand, 14167164 - 14166878
Alignment:
| Q |
109 |
cgttacttgttaggtattgaggtagcccaatccaaggatggtattgtaatttcacaaaaagaaatatgctatgaatattatagaagaaacatgtctattg |
208 |
Q |
| |
|
|||||||| || | |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||| ||||| |
|
|
| T |
14167164 |
cgttactttttggatattgaggtaacccaatccatggatggtattgtaatttcacaaag-gaaatatgctatggatattcttgaagaaacatgtatattg |
14167066 |
T |
|
| Q |
209 |
aatgtcaagccaattgatattcacatggatccaaatgtcaaacttcaacctaataa-agggagcctctatcatattcaataagatataataatttggttg |
307 |
Q |
| |
|
|||| ||||||| |||||| || |||||||||||||| ||| || ||||||||| |||||||||||||| ||||| ||||||||| | ||| ||| |
|
|
| T |
14167065 |
aatgccaagccagttgatactcctatggatccaaatgttaaa-atctacctaataagggggagcctctatcagattcaggaagatataagagattgattg |
14166967 |
T |
|
| Q |
308 |
gaaaaattaaattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatt-tttaattctccttgtcaagaa |
396 |
Q |
| |
|
| |||||| |||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||||| || ||||||||||| |||||| |
|
|
| T |
14166966 |
g-aaaattgaattatctcatagtcacttgtccagacatttcctttgaggttagtatggtaagccaattcttaaattctccttgccaagaa |
14166878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1532 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold1532
Description:
Target: scaffold1532; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 317 - 443
Target Start/End: Complemental strand, 354 - 227
Alignment:
| Q |
317 |
aattatctcacaatcactcgtccagacatttcctttgcagttagtgtggtaagccaatt-tttaattctccttgtcaagaaaacacaaatactttaattc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||| |||||| ||| |||| |||||||| |
|
|
| T |
354 |
aattatctcacaatcactcgtccagacatttcctttgtagttagtgtggtaagccaattcttaaattctccttgccaagaacacataaatgctttaattt |
255 |
T |
|
| Q |
416 |
agatttttaaatacatcgaaggtgctcc |
443 |
Q |
| |
|
||| |||| |||||| |||||||||| |
|
|
| T |
254 |
gaattcttaagtacatcaaaggtgctcc |
227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1532; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 531 - 639
Target Start/End: Complemental strand, 124 - 16
Alignment:
| Q |
531 |
tattgtgtacttgttggcggaaatctgatattctggaagggtaagaaacaaaatgtaactgcaagatcaagcgtagaggtcgaatatagggccatgacac |
630 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| || |||| ||||||||||||||||| |||||||||||||| | || |||||||| | |||| ||| |
|
|
| T |
124 |
tattgtgtacttgttgaaggagacctgatatcctagaagagtaagaaacaaaatgtagttgcaagatcaagcgctgtggcagaatatagagtcatggcac |
25 |
T |
|
| Q |
631 |
tagtaacat |
639 |
Q |
| |
|
||||||||| |
|
|
| T |
24 |
tagtaacat |
16 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 42976 - 42879
Alignment:
| Q |
10 |
cgaagaaaatgagctcctggaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagtaccaaaaccaatact |
107 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||||||||||| | ||| | ||||||||||||||| |||||||||| ||||||| | |||||||| |
|
|
| T |
42976 |
cgaacaaaatgagctcatggagtattattgtcaatacgctcactagtatgcaaccaaggttcatcaaggataggaatacaagtaccagacccaatact |
42879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 17393242 - 17393320
Alignment:
| Q |
15 |
aaaatgagctcctggaatattaccgtcaatacgctcaccattatttagccaaggttcatcaagaataggaatacgagta |
93 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||||||| | | ||||||||||||| |||||||||| |||| |
|
|
| T |
17393242 |
aaaatgagctcctgaaatattattgtcaatacactcaccattatgcaacgaaggttcatcaaggataggaatacaagta |
17393320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1838 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1838
Description:
Target: scaffold1838; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 639
Target Start/End: Complemental strand, 1307 - 1234
Alignment:
| Q |
566 |
gaagggtaagaaacaaaatgtaactgcaagatcaagcgtagaggtcgaatatagggccatgacactagtaacat |
639 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| | || |||||||| | |||| |||||||||||| |
|
|
| T |
1307 |
gaagagtaagaaacaaaatgtagttgcaagatcaagcgctgtggcagaatatagagtcatggcactagtaacat |
1234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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