View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_22 (Length: 340)
Name: NF15906_low_22
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 62 - 321
Target Start/End: Complemental strand, 2389741 - 2389482
Alignment:
| Q |
62 |
attaaaggacaattgatgaatcgcatccaagagagtagaaattgcagaagcatgtagctagataccccagttcctatacagtaacatgtatatttcatgt |
161 |
Q |
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| T |
2389741 |
attaaaggacaattgatgaatcgcatccaagagagtagaaattccagaagcatgtagctagataccccagttcctatacagtaacatgtatatttcatgt |
2389642 |
T |
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| Q |
162 |
atcttgagaattgagattgttggataacaatgttttatgtactaaattattttattcagcttcgagtttcgcctaagggtctgtttggcagcagatggcc |
261 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2389641 |
atcttgagaattgagattgttggatgacaatgttttatgtactaaattattttattcagcttcgagtttcgcctaagggtctgtttggcagcagatggcc |
2389542 |
T |
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| Q |
262 |
gtctgaatatgatatctcgcatccggaatgtcaatggcaagcctttcagtttctcctttg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2389541 |
gtctgaatatgatatctcgcatccggaatgtcaatggcaagcctttcagtttctcctttg |
2389482 |
T |
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