View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_24 (Length: 328)
Name: NF15906_low_24
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 13800228 - 13800530
Alignment:
| Q |
19 |
aaatctgacagtaggcacatgatattggaagaatggaagataatgaatcagaatctacagtgaaattaatgtcgacataaggatctgattcttttaccat |
118 |
Q |
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| T |
13800228 |
aaatctgacagtaggcacatgatattggaagaatggaagataatgaatcagaatctacagtgaaattaatgtcgacataaggatctgattcttttaccat |
13800327 |
T |
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| Q |
119 |
tt---ctccttcaagatgaatccttagcctcctctgccacctttgtttgtcgcccattagcagcaaaacttctctatgctctgttttacaacaccacaaa |
215 |
Q |
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| T |
13800328 |
tttttctccttcaagatgaatccttagcctcctctgccacctttgtttgtcgcccattagcagcaaaacttctccatgctctattttacaacaccacaaa |
13800427 |
T |
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| Q |
216 |
aaggcagttacaaatgatattcaacctgaatgtggataatgttagtgccaccaaggacgagcacatccacgcatcgcagtcacaacttgtgccaacttct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13800428 |
aaggcagttacaaatgatattcaacctgaatgtggataatgttagtgccaccaaggacgagcacatccacgcatcgcagtcacaacttgtgccaacttct |
13800527 |
T |
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| Q |
316 |
ctg |
318 |
Q |
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| T |
13800528 |
ctg |
13800530 |
T |
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