View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_26 (Length: 313)
Name: NF15906_low_26
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 53675957 - 53676268
Alignment:
| Q |
9 |
aagcaaaggtggtgggcatgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattattttta |
108 |
Q |
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| T |
53675957 |
aagcaaaggtggtgggcatgtatatcattttatcttgtcttgttatataagccaaaaatgaacctcctttttacaaaattttgtgcctttattattttta |
53676056 |
T |
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| Q |
109 |
gtttt---------acttccagttggtaggaaagcttgttggactatttgcaattcttgnnnnnnntagttacagtcatcactttatcatcaatgaaact |
199 |
Q |
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| T |
53676057 |
gtttttttttttttacttccagttggtaggaaagcttgttggactatttgcaattcttgaaaaaaatagttacattcatcactttatcatcaatgaaact |
53676156 |
T |
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| Q |
200 |
ttgagaggacactaactgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaaccaccaaaccttgcaaggttgccacatagcct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
53676157 |
ttgagaggacactaactgttttctctttttctgatggatgataaagtggaaaatatttctgtctctaa--atcaaaccttgcaaggttgccacatagcct |
53676254 |
T |
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| Q |
300 |
tcattatttttgac |
313 |
Q |
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| T |
53676255 |
tcattatttttgac |
53676268 |
T |
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