View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_27 (Length: 306)
Name: NF15906_low_27
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 22517271 - 22517547
Alignment:
| Q |
11 |
ataatactgtcaagggaacaccacttaaagaatgatcaattttactctgctgctttaattgcaaaactgtgatgaagaaggggcctgatgcatcccaaaa |
110 |
Q |
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| T |
22517271 |
ataatactgtcaagggaacaccacttaaagaatgatcatttttactctgctgctttaattgcaaacctgtgatgaagaagggacctgatgcatcccaaaa |
22517370 |
T |
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| Q |
111 |
agttatggctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaaattaatcccacctttgtggttt |
210 |
Q |
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| T |
22517371 |
agttatgcctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtagaattcaagttaatcccacctttgtggttt |
22517470 |
T |
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| Q |
211 |
gtttcaattgaaataagttgtggatgattttttatcatctgattgtaatactcatctgcagaataaaacacaccggt |
287 |
Q |
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| T |
22517471 |
gtttcaattgaaacaagttgtggatgatttttgatcatctgactgtaatactcatctgcagaataaaacacaccggt |
22517547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 57 - 262
Target Start/End: Original strand, 9710354 - 9710559
Alignment:
| Q |
57 |
ctgctgctttaattgcaaaactgtgatgaagaaggggcctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatg |
156 |
Q |
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||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9710354 |
ctgctgctttaattgcaaaactgggatgaagaagggacatgatgcatcccaaaatgttatggctccattatggtgtccagttatgtacaagtttttaatg |
9710453 |
T |
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| Q |
157 |
tttgaaaatccagagaagttggtagaattcaaattaatcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgt |
256 |
Q |
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| T |
9710454 |
tttgaaaatccagtgaagttggcagaactcaggttaagcccatctttgtgatttgtttcaattggaataagctgtggataacttttgatcatttgactat |
9710553 |
T |
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| Q |
257 |
aatact |
262 |
Q |
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|||||| |
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| T |
9710554 |
aatact |
9710559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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