View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_28 (Length: 305)
Name: NF15906_low_28
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 11079583 - 11079868
Alignment:
| Q |
1 |
gtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagat |
100 |
Q |
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| T |
11079583 |
gtgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgttttgttgagctttggaagcttagggagattttctaaggctcaaattaatcagat |
11079682 |
T |
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| Q |
101 |
agctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccagaaggg |
200 |
Q |
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| T |
11079683 |
agctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccagaaggg |
11079782 |
T |
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| Q |
201 |
tttttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagtaggtgg |
286 |
Q |
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| T |
11079783 |
tttttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaaggttcaatactaagacatagctcagttggtgg |
11079868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 11002443 - 11002696
Alignment:
| Q |
2 |
tgggtgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagata |
101 |
Q |
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| T |
11002443 |
tgggtgtttgatttggcttgactcgcaacctagtcaaagcgtcgtgtttttgagttttggaagcatggggagattttctaaggctcagttgaatgagata |
11002542 |
T |
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| Q |
102 |
gctattggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccagaagggt |
201 |
Q |
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| T |
11002543 |
gctattggattggagaaaagtgagcaaagattcttatggattgtaaggagcgagtcaaacttggaggaacttagtttggatgacttgttgccagaagggt |
11002642 |
T |
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| Q |
202 |
ttttggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaag |
255 |
Q |
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| T |
11002643 |
ttttggagaggacgaaggaaaagggaatggtggtgagaaattgggcaccacaag |
11002696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 11018828 - 11019077
Alignment:
| Q |
6 |
tgtttgagttggctcgattcacagccaggtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagcta |
105 |
Q |
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| T |
11018828 |
tgtttgagttggctcgactcgcaaccaagtcaaagcgtcgtgttgttgagctttggaagcatgggaagattttctagggctcaattgaatgagatagcta |
11018927 |
T |
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| Q |
106 |
ttggtttggaaaaaagtgaacaaagattcttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccagaagggttttt |
205 |
Q |
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| T |
11018928 |
ttggattggagaaaagtgagcaaagattcttgtgggttgttaggagtgaaccagactcagacaagttgagtttggacgagttatttccagaagggttttt |
11019027 |
T |
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| Q |
206 |
ggagaggacaaaggagaagggaatggttgttagaaactgggcaccacaag |
255 |
Q |
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| T |
11019028 |
ggagaggacaaaggacaagggaatggttgtgagaaattgggccccacaag |
11019077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 263
Target Start/End: Original strand, 10982246 - 10982474
Alignment:
| Q |
35 |
tcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagctattggtttggaaaaaagtgaacaaagattc |
134 |
Q |
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| T |
10982246 |
tcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattggaaaaaagtgagcaaagattc |
10982345 |
T |
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| Q |
135 |
ttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccagaagggtttttggagaggacaaaggagaagggaatggttg |
234 |
Q |
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| T |
10982346 |
ttgtgggttattaggagcgagttggatttagaggagcaaagtttggacgagttgctccctgaagggtttttggagaggacaaaagaaaggggaatggtgg |
10982445 |
T |
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| Q |
235 |
ttagaaactgggcaccacaaggttcaata |
263 |
Q |
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| T |
10982446 |
taagaaattgggcaccacaaggtgcaata |
10982474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 34 - 263
Target Start/End: Original strand, 10968295 - 10968524
Alignment:
| Q |
34 |
gtcaaagcgtcgtgttgttgagctttggaagcttagggagattttctaaggctcaaattaatgagatagctattggtttggaaaaaagtgaacaaagatt |
133 |
Q |
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||||||||||||||||||| || ||||||||| | || ||||||||||||||||| | ||||||||||| |||| ||||||| |||||| |||||||| |
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| T |
10968295 |
gtcaaagcgtcgtgttgttaagttttggaagcatgggaagattttctaaggctcagttgaatgagatagcacttggattggaaataagtgagcaaagatt |
10968394 |
T |
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| Q |
134 |
cttgtggattgttaggagcgatatggagtcggaggaactaagtttggatgagttgttgccagaagggtttttggagaggacaaaggagaagggaatggtt |
233 |
Q |
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| T |
10968395 |
cttgtgggttgttaggagtgagttggacttagaggagcaaagtttggacgagttgcttcctgaagggtttttggagaggacaaagcaaaagggaatggtg |
10968494 |
T |
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| Q |
234 |
gttagaaactgggcaccacaaggttcaata |
263 |
Q |
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| T |
10968495 |
gcaagaaattgggcaccacaaggtgcaata |
10968524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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