View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_29 (Length: 302)
Name: NF15906_low_29
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 41854837 - 41855006
Alignment:
| Q |
1 |
gtttgagattgagtttgagtgatggagatgaagaatgcagaagaagaatgtgcggtcgagttattgttgatgccatgatgtttcaaactcagtcccaaca |
100 |
Q |
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| T |
41854837 |
gtttgagattgagtttgagtgatggagatgaagagtgcagaagtagaatgtgcggtcgagttattgttgatgccatgatgtttcaaacttagtcccaaca |
41854936 |
T |
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| Q |
101 |
ctcataacaaacacccaacctctgtcaactagtattggatcaaggtggatatcgttagaatcgttgatga |
170 |
Q |
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| T |
41854937 |
ctcataacaaacacccaacctctgtcaactagtattgcatcaaggtggatatcgttagaatcgttgatga |
41855006 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 41855055 - 41855143
Alignment:
| Q |
179 |
ggtgacccaaaaaataagtttaatgagtaaataacaagtcattatgtgatatccgtc------tcatgttaagtgagacactcgttctt |
261 |
Q |
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| T |
41855055 |
ggtgacccaaaaaataagtttaatgagtaaataacaagtcattatgtgatatccgtctcatcttcatgttaagtgagacactcgatctt |
41855143 |
T |
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