View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_3 (Length: 602)
Name: NF15906_low_3
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 10803436 - 10802846
Alignment:
| Q |
1 |
cctaggccattcaggtaatcttacatcgtaattaccctgccgaaaatgagggactaatccttgacacgttcttttgtatacttatatctgagatcgaact |
100 |
Q |
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| T |
10803436 |
cctaggccattcaggtaatcttacatcgtaatctctctgccggaa-tgagggactaattcttgagacgttctttagtacacacatgtctgagatcgaact |
10803338 |
T |
|
| Q |
101 |
cctgacaacgtgatcattcgtaaatgttgaacattttgaagaattttctttttgtgttgtgttaataaatttgtagaaatgtgtatgaatataatatatg |
200 |
Q |
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| T |
10803337 |
cctgacaacgtgatcattcgtaaatgttgaacattttgaagaattttctttttgtgttgtgttaataaatttgtagaaatgtgtatgaatataatatatg |
10803238 |
T |
|
| Q |
201 |
tcaataatgagcttcatagttgaaatacattgttcaatgcctattcatgctctatatttactcaattgattttgcacttagattcttcttttcttttatg |
300 |
Q |
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| T |
10803237 |
tcaataatgagcttcatagttgaaatacactgttcaatgcctattcatgctctatatttactcaattgattctgcacttagattcttcttttcttttatg |
10803138 |
T |
|
| Q |
301 |
tttactgcttattatcttcaatatttttctaacaaattatacttgcatatcacaattatataaatcaaattggatcctcttggcattcttcatctccaga |
400 |
Q |
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| T |
10803137 |
tttactgcttattatcttcaatatttttctaacaaattatacttgcatatcacaattatataaatcaaattggatcctcttgacattcttcatctccaga |
10803038 |
T |
|
| Q |
401 |
aggaggnnnnnnnnnnngtggaaggacatgaaatgtatcacatctgtctttaattaatggaaagcctactaagacttttgcgcctcataagggcaatagg |
500 |
Q |
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| T |
10803037 |
aggagaaaaaaaaaaaagtggaaggacatgaaatgtatcacatctgtctttaattattgggaagcctactaagacttttgcgcctcataagggcaatagg |
10802938 |
T |
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| Q |
501 |
caaggagatccnnnnnnnaaacaaaattgaaagcgtggttttacaaataattggaaatttaattaactatgtggaattaagggggtgtattg |
592 |
Q |
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| T |
10802937 |
caaggagatccttttttaaaacaaaattgaaagcgtggttttacagacatttggaaatttaattaactatgtggaattaagggggtgtattg |
10802846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 10794142 - 10794091
Alignment:
| Q |
170 |
tttgtagaaatgtgtatgaatataatatatgtcaataatgagcttcatagtt |
221 |
Q |
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| T |
10794142 |
tttgtagaaatgtgtatgaatataatatatgtcaataatgagcttcatagtt |
10794091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 10794093 - 10794057
Alignment:
| Q |
232 |
gttcaatgcctattcatgctctatatttactcaattg |
268 |
Q |
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| T |
10794093 |
gttcaatccctattcatgctctatatttactcaattg |
10794057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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