View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_30 (Length: 293)
Name: NF15906_low_30
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 8177143 - 8177406
Alignment:
| Q |
18 |
catggaacacttttgacagaagaatcttcactgcattagtggcaatcccttgaccccaatagttgaatccaatagcataacccatatctgctttatactt |
117 |
Q |
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| T |
8177143 |
catggaacacttttgacagaagaatcttcactgcattagtggcaatcccttgaccccaatagttgaatccaatagcataacccatatctgctttatattt |
8177242 |
T |
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| Q |
118 |
ctcatcattagcatgaggaagaatccaaaccattccaatggagtggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaa |
217 |
Q |
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| T |
8177243 |
ctcatcattagcatgaggaagaatccaaaccattccaatggagtggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaa |
8177342 |
T |
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| Q |
218 |
tccaaaccttctttctttgaattacaagtttccaatcgagtatcctcaattactctttcatctc |
281 |
Q |
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| T |
8177343 |
tccaaagcttctttctttgaattacaagtttccaatcgagtatcctcaattactctttcatctc |
8177406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 8169573 - 8169756
Alignment:
| Q |
32 |
gacagaagaatcttcactgcattagtggcaatcccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcat |
131 |
Q |
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| T |
8169573 |
gacaaaagaatcttcactgctttggtggctacaccttggccccaatagttaaacccaatagcataacctaaatctgctttaaactttgcatca---ggat |
8169669 |
T |
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| Q |
132 |
gaggaagaatccaaaccattccaatggagtggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaat |
218 |
Q |
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| T |
8169670 |
aaggaaggacaaaaacaattccaatagagtgatcattaagacatattgattgttggaatgggtaaatgcaatcattttttatgaaat |
8169756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 8172204 - 8172392
Alignment:
| Q |
32 |
gacagaagaatcttcactgcattagtggcaatcccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcat |
131 |
Q |
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| T |
8172204 |
gacaaaagaatcttaagtgcttttgtggctataccttggccccaataattgaatccaatagcaaaacctaaatctgctttaaactttgcataa---gaaa |
8172300 |
T |
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| Q |
132 |
gaggaagaatccaaaccattccaatggagtggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaatccaaa |
223 |
Q |
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| T |
8172301 |
ttggaagaacaaaaacaattccaatagagtgatcatcaagacatattgattgttggaatgggtaaatacaatctttctttatgaaattcaaa |
8172392 |
T |
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