View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_35 (Length: 263)
Name: NF15906_low_35
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11191860 - 11192104
Alignment:
| Q |
1 |
gatgtgaaacgtaccagaacggaggaaacattagcaccaagtgcaagaatatccgcacaagacacaacactaggacaagcaagttcgattgcggctttga |
100 |
Q |
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| T |
11191860 |
gatgtgaaacgtaccagaacggaggaaacattagcaccaagtgcaagaatatctgcacaagacacaacactaggacaagcaagttcgattgcggctttga |
11191959 |
T |
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| Q |
101 |
tttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcaagatagtatcagagtcattcaacaagagtgatgcatc |
200 |
Q |
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| T |
11191960 |
tttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgatgcatc |
11192059 |
T |
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| Q |
201 |
acaaccctttcataaacatagatatcaaatatatgagttacaaat |
245 |
Q |
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| T |
11192060 |
acaaccctttcataaacatagatatcaaatatatgagttacaaat |
11192104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 11171368 - 11171135
Alignment:
| Q |
12 |
taccagaacggaggaaacattagcaccaagtgcaagaatatccgcacaagacacaacactaggacaagcaagttcgattgcggctttgatttgattcaca |
111 |
Q |
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| T |
11171368 |
taccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcaca |
11171269 |
T |
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| Q |
112 |
atatccaaacctcttattgagtttctatttggcaaagctccttgctcactcaagatagtatcagagtcattcaacaagagtgatgcatcacaaccctttc |
211 |
Q |
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| T |
11171268 |
acatctaaacctcttattgagttgttatttccaaaagctgtttgctcacttgtgatcgtagaagtggtattcaacaagattgatgcatcacaaccctttc |
11171169 |
T |
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| Q |
212 |
ataaacatagatatcaaatatatgagttacaaat |
245 |
Q |
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| T |
11171168 |
ataaacatagatataaaatatatgagctacaaat |
11171135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 11184823 - 11184898
Alignment:
| Q |
3 |
tgtgaaacgtaccagaacggaggaaacattagcaccaagtgcaagaatatccgcacaagacacaacactaggacaa |
78 |
Q |
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| T |
11184823 |
tgtggaacataccagaactgaggaaatgttagcaccaagtgcaagaatatcagcacaagacacaacactaggacaa |
11184898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 11145359 - 11145247
Alignment:
| Q |
96 |
tttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcaagatagtatcagagtcattcaacaagagtgat |
195 |
Q |
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| T |
11145359 |
tttgatttgattcacaacatccaaacctctcaatgagtttctgtttggaaaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgat |
11145260 |
T |
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| Q |
196 |
gcatcacaaccct |
208 |
Q |
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| T |
11145259 |
gcatcacaaccct |
11145247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 11137060 - 11136948
Alignment:
| Q |
96 |
tttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcaagatagtatcagagtcattcaacaagagtgat |
195 |
Q |
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||||||||||||||||| ||||||||||| || ||||| ||||||| |||||| |||| ||||||| || ||||||| | ||||| || | |||| |
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| T |
11137060 |
tttgatttgattcacaacatccaaacctcgtagagagttgatatttgggaaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgat |
11136961 |
T |
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| Q |
196 |
gcatcacaaccct |
208 |
Q |
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| T |
11136960 |
gcatcacaaccct |
11136948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 11149293 - 11149226
Alignment:
| Q |
96 |
tttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactca |
163 |
Q |
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||||||||||||||||| ||| |||||||||| ||||||||| ||||| ||||| |||| ||||||| |
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| T |
11149293 |
tttgatttgattcacaacatctaaacctcttaatgagtttctgtttggaaaagcatcttgttcactca |
11149226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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