View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_4 (Length: 595)
Name: NF15906_low_4
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 112 - 578
Target Start/End: Original strand, 26592739 - 26593209
Alignment:
| Q |
112 |
aagaattgaacttgggttctaacgagtttgttcctggtggaactcattaagtactcgaacccaaatacttggtcataaccgtgaaattgtgtatttgata |
211 |
Q |
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| T |
26592739 |
aagaattgaacttgggttctcccgaatttgttcttggtggaactcattaagtactcgaacccaaatacttggtcataaccgtgaaattgtgtatttgata |
26592838 |
T |
|
| Q |
212 |
tgaaattagagacttactagggtcttaggttgtttgtgtagtagcaagtagctctgttactttgaaacttagcccaatagctgccaaaaacttaacttga |
311 |
Q |
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| T |
26592839 |
tgaaattagagacttactagggtctttggttgtttgtgtagtagcaagtagctctgttactttgaaacttagcccaatagctgccaaaaacttaacttga |
26592938 |
T |
|
| Q |
312 |
ataatctggcacttaaactggttcatagcattcaaattccaggtgaaagtgtaagtgtatcacatatcatgtttcatacattgcaagcatatgacaaagc |
411 |
Q |
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| T |
26592939 |
ataatctggcactgaaactggttcatagcattcaaattccaggtgaaagtgtaagtgtatcacatatcatgtttcctacattgcaagcatatgacaaagc |
26593038 |
T |
|
| Q |
412 |
tgctgccaattccacttcatttactc---ctgcaaccatacaccataccttacccttgtatggcacattgttctttggagctggtaatggtgcatagttt |
508 |
Q |
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| T |
26593039 |
tgctgccaattccacttcatttactccttctgcaaccatacaccataccttacccttgtatggcacattgttctttggagctggtaatggtgcatagtct |
26593138 |
T |
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| Q |
509 |
gtgatgtgttttttctttcttcctgttaa-gtctaaaccataaactggggttctgtctgtgtggtaataac |
578 |
Q |
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| T |
26593139 |
gtgatgtgttttttctttcttcctgttaaggtctaaaccataaactggggttctgtctgtgtagtaataac |
26593209 |
T |
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Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 326 - 504
Target Start/End: Original strand, 34749579 - 34749753
Alignment:
| Q |
326 |
aaactggttcatagcattcaaattccaggtgaaagtgtaagtgtatcacatatcatgtttcatacattgcaagcatatgacaaagctgctgccaattcca |
425 |
Q |
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|||||||||||||||||||| ||||||||||||||| | ||||| |||||||| ||||||||||||||| | |||||||||||| ||||| | |
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| T |
34749579 |
aaactggttcatagcattcat-ttccaggtgaaagtgca------tcacaggtcatgtttgctacattgcaagcataggtcaaagctgctgctaattcta |
34749671 |
T |
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| Q |
426 |
cttcatttactcct---gcaaccatacaccataccttacccttgtatggcacattgttctttggagctggtaatggtgcata |
504 |
Q |
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| T |
34749672 |
tttcatttgctccttctgcagccacacaccataccttacctttgtatggcacattgttctttggagcttgtaatggtgcata |
34749753 |
T |
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