View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15906_low_41 (Length: 246)

Name: NF15906_low_41
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15906_low_41
NF15906_low_41
[»] chr8 (4 HSPs)
chr8 (2-228)||(42078515-42078740)
chr8 (2-114)||(23520268-23520381)
chr8 (136-225)||(21233002-21233086)
chr8 (11-125)||(11220410-11220524)
[»] chr4 (9 HSPs)
chr4 (127-228)||(41947387-41947488)
chr4 (7-124)||(14156732-14156850)
chr4 (160-228)||(8362680-8362749)
chr4 (2-71)||(19126991-19127060)
chr4 (170-222)||(49496928-49496980)
chr4 (191-228)||(10345717-10345754)
chr4 (2-61)||(8280620-8280679)
chr4 (12-122)||(12719893-12720004)
chr4 (139-223)||(40457662-40457744)
[»] chr1 (12 HSPs)
chr1 (8-125)||(41488721-41488839)
chr1 (136-226)||(21265982-21266070)
chr1 (139-225)||(336898-336981)
chr1 (161-212)||(9538424-9538475)
chr1 (136-225)||(6834845-6834933)
chr1 (9-125)||(16476724-16476841)
chr1 (1-124)||(29806302-29806426)
chr1 (7-125)||(45433813-45433932)
chr1 (161-222)||(29387749-29387810)
chr1 (136-207)||(36075277-36075344)
chr1 (139-223)||(43409169-43409251)
chr1 (172-228)||(37668557-37668613)
[»] chr3 (7 HSPs)
chr3 (127-228)||(15997423-15997521)
chr3 (1-124)||(55256018-55256141)
chr3 (136-225)||(16974248-16974335)
chr3 (139-225)||(46405626-46405709)
chr3 (139-223)||(5025647-5025728)
chr3 (139-207)||(16473999-16474064)
chr3 (126-158)||(52642607-52642639)
[»] chr7 (6 HSPs)
chr7 (136-226)||(10290430-10290518)
chr7 (163-227)||(48655602-48655666)
chr7 (127-228)||(12197450-12197549)
chr7 (160-228)||(9741539-9741608)
chr7 (139-225)||(15875069-15875153)
chr7 (12-45)||(6739558-6739591)
[»] scaffold0618 (1 HSPs)
scaffold0618 (139-225)||(5080-5163)
[»] chr2 (4 HSPs)
chr2 (139-225)||(40446274-40446357)
chr2 (127-226)||(16132339-16132433)
chr2 (136-225)||(12775949-12776036)
chr2 (141-226)||(32736617-32736699)
[»] chr5 (4 HSPs)
chr5 (178-228)||(42859657-42859707)
chr5 (139-225)||(535773-535857)
chr5 (136-207)||(40686280-40686347)
chr5 (10-42)||(29614091-29614123)
[»] scaffold0413 (1 HSPs)
scaffold0413 (170-226)||(7659-7715)
[»] scaffold1838 (1 HSPs)
scaffold1838 (2-72)||(1180-1250)
[»] chr6 (3 HSPs)
chr6 (136-212)||(10752832-10752907)
chr6 (139-225)||(34635229-34635313)
chr6 (139-207)||(25003865-25003930)
[»] scaffold0657 (1 HSPs)
scaffold0657 (139-225)||(5460-5544)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 42078740 - 42078515
Alignment:
Q  2 catgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgacgttatatgtgatagtcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  42078740 catgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcgaggaagcacattcaacgacgttatatgtgatagtcaat 42078641  T
Q  102 ctgcgttgcatattgccttaaatcttgtaacgctccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaaca 201  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  42078640 ctgcgttgcatattgcctcaaatcttgtaacgctccaatattttatatacatatttt-tttttaaattattttcttaacttgtcacttagttgttcaaca 42078542  T
Q  202 atttattttataagcgagaaacttcac 228  Q
    |||||||||||||||||||||||||||    
T  42078541 atttattttataagcgagaaacttcac 42078515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 23520268 - 23520381
Alignment:
Q  2 catgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgacg-ttatatgtgatagtcaa 100  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| | |||||| |  ||| ||||  ||||||||||| ||||    
T  23520268 catgacactagtaacatgtgaactcatttggttgaagcagttactcaaggaacttcaattcgaagaagcataaccaatgacgcctatatgtgataatcaa 23520367  T
Q  101 gctgcgttgcatat 114  Q
    || || ||||||||    
T  23520368 gccgctttgcatat 23520381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 21233086 - 21233002
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    ||||||||||||||| |||     ||||||||| |||||||||| ||||||| |  |||||||||||||||||||||| |||||||||||    
T  21233086 ccaatattttatatatgta-----tttttaaatgattttcttgagttgtcacctgattgttcaacaatttattttatatgcgagaaactt 21233002  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 11220410 - 11220524
Alignment:
Q  11 agtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgacgttatatgtgatagtcaagctgcgttgc 110  Q
    |||||||| ||||||||||||||||||  ||||||||||| | ||||||||| | |||||||   ||| |||  ||||||||||| ||||| ||  ||||    
T  11220410 agtaacatatgagctcatttggttgaattagttacttaagaagcttcaattcgaagaagcacgaccaatgacactatatgtgataatcaagttgtattgc 11220509  T
Q  111 atattgccttaaatc 125  Q
    ||||| ||| |||||    
T  11220510 atatttcctgaaatc 11220524  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 41947488 - 41947387
Alignment:
Q  127 tgtaacgctccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttc 226  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41947488 tgtaacgctccaatattttatatacgtatttttttttaaaattattttcttgacttgtcacttagttgttcaacaatttattttataagtgagaaacttc 41947389  T
Q  227 ac 228  Q
    ||    
T  41947388 ac 41947387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 14156850 - 14156732
Alignment:
Q  7 cactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgac-gttatatgtgatagtcaagctgc 105  Q
    |||||||||||||||| |||||||||||||| |||||||| || |||||||||||  | |||| ||   ||| |||  |||||||||| | |||||| ||    
T  14156850 cactagtaacatgtgaactcatttggttgaagcagttactcaaagaacttcaatttgaagaagtacgaccaatgactcttatatgtgacaatcaagccgc 14156751  T
Q  106 gttgcatattgccttaaat 124  Q
    |||||||||||||| ||||    
T  14156750 gttgcatattgcctcaaat 14156732  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 8362680 - 8362749
Alignment:
Q  160 tttttaaattattttcttgacttgtcacttagttgttcaacaatttat-tttataagcgagaaacttcac 228  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||| |||||  |||||||| |||||    
T  8362680 tttttaaatgattttcttgacttgtcacttagttgttcaacagtttatatttatgtgcgagaaatttcac 8362749  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 19126991 - 19127060
Alignment:
Q  2 catgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagca 71  Q
    ||||||||||||||||||||| |||||||||||||| || ||||| || |||||||||||| | ||||||    
T  19126991 catgacactagtaacatgtgaactcatttggttgaagcatttactcaaagaacttcaattcgaagaagca 19127060  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 49496928 - 49496980
Alignment:
Q  170 attttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaa 222  Q
    ||||||||||||||||| ||||||| |||||||||||||||||  ||||||||    
T  49496928 attttcttgacttgtcatttagttggtcaacaatttattttatgtgcgagaaa 49496980  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 10345754 - 10345717
Alignment:
Q  191 gttgttcaacaatttattttataagcgagaaacttcac 228  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10345754 gttgttcaacaatttattttctaagcgagaaacttcac 10345717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 8280679 - 8280620
Alignment:
Q  2 catgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaatt 61  Q
    |||| ||||| |||| |||||||||||||||||||| || |||||  |||||||||||||    
T  8280679 catggcactaataacttgtgagctcatttggttgaagcatttactcgaggaacttcaatt 8280620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 12720004 - 12719893
Alignment:
Q  12 gtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgac-gttatatgtgatagtcaagctgcgttgc 110  Q
    |||||||||||||||||||||||||| ||| |||| |  |||||||||||  | ||||||||   || | |  || |||||||||||||||   ||||||    
T  12720004 gtaacatgtgagctcatttggttgaatcagctactcagagaacttcaattagaagaagcacaaataatgtcatttgtatgtgatagtcaaggcacgttgc 12719905  T
Q  111 atattgccttaa 122  Q
    ||||||||||||    
T  12719904 atattgccttaa 12719893  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 40457662 - 40457744
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaac 223  Q
    |||||||||||| ||||||  ||| ||||| ||||||||| |||| |||||| || ||||||||| ||| ||||  |||||||||    
T  40457662 atattttatatatgtattt--tttataaataattttcttggcttgccacttaattattcaacaatctatattatgtgcgagaaac 40457744  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 41488839 - 41488721
Alignment:
Q  8 actagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgacg-ttatatgtgatagtcaagctgcg 106  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| | |||||||   ||| |||| |||||||||||| ||||||||||    
T  41488839 actagtaacatgtgaactcatttggttgaagcagctacttaaggaacttcaattcgaagaagcacgaccaatgacgcttatatgtgataatcaagctgcg 41488740  T
Q  107 ttgcatattgccttaaatc 125  Q
    |||||||| |||| |||||    
T  41488739 ttgcatatcgcctcaaatc 41488721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 21266070 - 21265982
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttc 226  Q
    ||||||||||||||| |||||||  |||||||| |||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  21266070 ccaatattttatatatgtatttt--ttttaaatgattttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaacttc 21265982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 336898 - 336981
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| |||||||   | ||||| ||||||||| |||| ||||||||||||||||||||||||||||  |||||||||||    
T  336898 atattttatatatgtatttt---tataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactt 336981  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 9538475 - 9538424
Alignment:
Q  161 ttttaaattattttcttgacttgtcacttagttgttcaacaatttattttat 212  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  9538475 ttttaaatgattttcttgacttgtcacttagttggtcaacaatttattttat 9538424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 6834845 - 6834933
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    ||||||||||||||| ||||||| ||||||||| |||||||| ||||| || || ||||||||  ||||||||||||  |||||||||||    
T  6834845 ccaatattttatatatgtatttt-tttttaaataattttctttacttgccatttggttgttcattaatttattttatgtgcgagaaactt 6834933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 16476841 - 16476724
Alignment:
Q  9 ctagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgac-gttatatgtgatagtcaagctgcgt 107  Q
    |||||||||||||| ||||||||||||||  ||||||| |||||||||| |||| | |||||||   ||| |||  |||||||||||| |||||  | ||    
T  16476841 ctagtaacatgtgaactcatttggttgaagtagttactcaaggaacttcgattcgaagaagcacgaccaatgacacttatatgtgataatcaagtcgtgt 16476742  T
Q  108 tgcatattgccttaaatc 125  Q
    |||||||||||| |||||    
T  16476741 tgcatattgcctaaaatc 16476724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 29806426 - 29806302
Alignment:
Q  1 ccatgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgacg-ttatatgtgatagtca 99  Q
    |||| ||||||||||||||||| ||||| | |||||| |||||||| ||||||||||||||  | |||||||   ||| || | |||||||||||| |||    
T  29806426 ccataacactagtaacatgtgaactcatgttgttgaaccagttactcaaggaacttcaatttgaagaagcacgaccaatgatgcttatatgtgataatca 29806327  T
Q  100 agctgcgttgcatattgccttaaat 124  Q
    |||  | ||||||||||||| ||||    
T  29806326 agcctcattgcatattgcctcaaat 29806302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 45433932 - 45433813
Alignment:
Q  7 cactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgac-gttatatgtgatagtcaagctgc 105  Q
    |||||||||||||||| |||||||||||||| || ||||| || |||||||||||  | |||||||   ||| |||  |||||||||| | |||||| |     
T  45433932 cactagtaacatgtgaactcatttggttgaagcaattactcaaagaacttcaatttgaagaagcacgaccaatgacacttatatgtgacaatcaagccgt 45433833  T
Q  106 gttgcatattgccttaaatc 125  Q
    |||||||||||||| |||||    
T  45433832 gttgcatattgcctcaaatc 45433813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 29387749 - 29387810
Alignment:
Q  161 ttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaa 222  Q
    |||||||| | ||||| ||||||||||||||||| |||||||||||||||||  ||||||||    
T  29387749 ttttaaatgactttctcgacttgtcacttagttggtcaacaatttattttatgtgcgagaaa 29387810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 36075277 - 36075344
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttat 207  Q
    ||||||||||||||| |||||||    | |||| |||||||| | |||||||||||||| ||||||||||||    
T  36075277 ccaatattttatatatgtatttt----taaaatgattttcttaaattgtcacttagttgctcaacaatttat 36075344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 43409251 - 43409169
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaac 223  Q
    |||||||||||| ||||||  ||| ||||| ||||||||| |||| |||||| || ||||||||| ||| ||||  |||||||||    
T  43409251 atattttatatatgtattt--tttataaataattttcttggcttgccacttaattattcaacaatctatattatgtgcgagaaac 43409169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 37668613 - 37668557
Alignment:
Q  172 tttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttcac 228  Q
    |||||||||||| ||| || ||| ||||||||||||||||   ||||||||||||||    
T  37668613 tttcttgacttgccacctaattgctcaacaatttattttacgtgcgagaaacttcac 37668557  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 15997521 - 15997423
Alignment:
Q  127 tgtaacgctccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttc 226  Q
    |||||||| | |||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| | |||||||||||||||| |||||| |||    
T  15997521 tgtaacgccctaatattttatatacgtatttt--ttttaaattattt-cttgacttgtcacttagttgttaagcaatttattttataagtgagaaatttc 15997425  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 55256018 - 55256141
Alignment:
Q  1 ccatgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcacattcaacgacg-ttatatgtgatagtca 99  Q
    ||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| | |||||||   ||| |||| |||||||||||| |||    
T  55256018 ccatggcactagtaacatgtgaactcatttggttgaagcagctacttaaggaacttcaattcgaagaagcacgaccaatgacgcttatatgtgataatca 55256117  T
Q  100 agctgcgttgcatattgccttaaat 124  Q
    ||||||| ||||||| |||| ||||    
T  55256118 agctgcg-tgcatatcgcctaaaat 55256141  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 16974248 - 16974335
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    ||||||||||||||| |||||||  |||||||| || ||||||||||| ||||||||||||||||||||||||||||  |||| ||||||    
T  16974248 ccaatattttatatatgtatttt--ttttaaataatcttcttgacttgccacttagttgttcaacaatttattttatgtgcgataaactt 16974335  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 46405709 - 46405626
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| |||||||   | ||||| ||||||||| |||| ||||||||||||||||||||||||||||  |||||||||||    
T  46405709 atattttatatatgtatttt---tataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactt 46405626  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 5025728 - 5025647
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaac 223  Q
    |||||||||||| |||||||   | ||||| |||| |||| |||| ||||||||||||||||||||||| ||||  |||||||||    
T  5025728 atattttatatatgtatttt---tataaataatttacttggcttgccacttagttgttcaacaatttatattatgtgcgagaaac 5025647  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 16473999 - 16474064
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttat 207  Q
    |||||||||||| |||||||   | ||||| ||||||||| |||| |||||||||||||||||||||||    
T  16473999 atattttatatatgtatttt---tataaataattttcttggcttgccacttagttgttcaacaatttat 16474064  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 52642639 - 52642607
Alignment:
Q  126 ttgtaacgctccaatattttatatacgtatttt 158  Q
    ||||||||||||||||||||||||| |||||||    
T  52642639 ttgtaacgctccaatattttatatatgtatttt 52642607  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 10290518 - 10290430
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttc 226  Q
    ||||||||||||||| || ||||  |||||||| |||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  10290518 ccaatattttatatatgtttttt--ttttaaatgattttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaacttc 10290430  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 48655666 - 48655602
Alignment:
Q  163 ttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttca 227  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||  |||||||| ||||    
T  48655666 ttaaatgattttcttgacttgtaacttagttgttcaacaatttattttatgtgcgagaaatttca 48655602  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 12197549 - 12197450
Alignment:
Q  127 tgtaacgctccaatattttatatacgtattttctttttaaattattttcttgacttgtcact---tagttgttcaacaatttattttataagcgagaaac 223  Q
    |||||||| ||||||||||||||| || |||| |     ||| || || |||||||||||||   ||||||||||||||||||||||||| |||||||||    
T  12197549 tgtaacgccccaatattttatatatgtttttttt-----aatgatatttttgacttgtcactaattagttgttcaacaatttattttatatgcgagaaac 12197455  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 9741539 - 9741608
Alignment:
Q  160 tttttaaattattttcttgacttgtcacttagttgttcaacaatttat-tttataagcgagaaacttcac 228  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||  |||||||| |||||    
T  9741539 tttttaaatgatttttttgacttgtcacttagttgttcaacagtttatatttatgtgcgagaaatttcac 9741608  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 15875153 - 15875069
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| |||||||  ||| |||| |||||||||||||| || ||  |||||||  ||||||||||||  |||||||||||    
T  15875153 atattttatatatgtatttt--tttaaaataattttcttgacttgccatttgattgttcattaatttattttatgtgcgagaaactt 15875069  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 6739558 - 6739591
Alignment:
Q  12 gtaacatgtgagctcatttggttgaaacagttac 45  Q
    ||||||||||||||||||||||||||| ||||||    
T  6739558 gtaacatgtgagctcatttggttgaaatagttac 6739591  T

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Target: scaffold0618 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 5080 - 5163
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| |||||||   | ||||| ||||||||| |||| ||||||||||||||||||||||||||||  |||||||||||    
T  5080 atattttatatatgtatttt---tataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactt 5163  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 40446274 - 40446357
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| |||||||   | ||||| ||||||||| |||| ||||||||||||||||||||||||||||  |||||||||||    
T  40446274 atattttatatatgtatttt---tataaataattttcttggcttgccacttagttgttcaacaatttattttatgtgcgagaaactt 40446357  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 16132433 - 16132339
Alignment:
Q  127 tgtaacgctccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttc 226  Q
    |||||||| ||||||||||| ||| |||||||     ||||| |||||||||| ||||||| || |||||||||||||||||||||  ||||||||||||    
T  16132433 tgtaacgccccaatattttacatatgtatttt-----taaatgattttcttgagttgtcacctaattgttcaacaatttattttatgtgcgagaaacttc 16132339  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 12776036 - 12775949
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    ||||||||||||||| |||||||  ||| |||| || ||||||||||  ||||||| ||||||||||||||||||||  |||||||||||    
T  12776036 ccaatattttatatatgtatttt--tttaaaataatcttcttgactttccacttagctgttcaacaatttattttatgtgcgagaaactt 12775949  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 32736699 - 32736617
Alignment:
Q  141 attttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttc 226  Q
    |||||||||| |||||||   | ||||| ||||||||| |||| ||| ||||||||||||||||||||||||  ||||||||||||    
T  32736699 attttatatatgtatttt---tataaataattttcttggcttgccacctagttgttcaacaatttattttatgtgcgagaaacttc 32736617  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 42859657 - 42859707
Alignment:
Q  178 gacttgtcacttagttgttcaacaatttattttataagcgagaaacttcac 228  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  42859657 gacttgtcacttagttgttcaacaatttaatttatatgcgagaaacttcac 42859707  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 535773 - 535857
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| |||||||  ||| |||| |||||||||||||| || || ||||||||  ||||||||||||  |||||||||||    
T  535773 atattttatatatgtatttt--tttaaaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaactt 535857  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 40686280 - 40686347
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttat 207  Q
    ||||||||||||||| |||||||    |||||| |||||||| | || ||||||||||| ||||||||||||    
T  40686280 ccaatattttatatatgtatttt----ttaaatgattttcttaaattatcacttagttgctcaacaatttat 40686347  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 29614123 - 29614091
Alignment:
Q  10 tagtaacatgtgagctcatttggttgaaacagt 42  Q
    ||||||||||||||||||||| |||||||||||    
T  29614123 tagtaacatgtgagctcatttagttgaaacagt 29614091  T

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Target: scaffold0413 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 7659 - 7715
Alignment:
Q  170 attttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaacttc 226  Q
    |||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  7659 attttcttgagttgtcacctagttgttcaacaatttattttatgtgcgagaaacttc 7715  T

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Target: scaffold1838 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 1250 - 1180
Alignment:
Q  2 catgacactagtaacatgtgagctcatttggttgaaacagttacttaaggaacttcaattcaaggaagcac 72  Q
    |||| |||||||||||||||| |||||||||| ||| || ||||| ||||||||||||||| | |||||||    
T  1250 catggcactagtaacatgtgaactcatttggtagaagcatttactcaaggaacttcaattcgaagaagcac 1180  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 10752907 - 10752832
Alignment:
Q  136 ccaatattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttat 212  Q
    ||||||||||||||| ||| ||| ||| ||||| |||||||||||||| ||||| |||||||| |||||| ||||||    
T  10752907 ccaatattttatatatgtacttt-tttataaataattttcttgacttgccacttggttgttcagcaatttgttttat 10752832  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 34635229 - 34635313
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| |||||||  ||| |||| |||||||||||||| || || ||||||||  ||||||||||||  |||||||||||    
T  34635229 atattttatatatgtatttt--tttaaaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaactt 34635313  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 25003865 - 25003930
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttat 207  Q
    |||||||||||| |||||||   | ||||| ||||||||| |||| |||||||||||||||||||||||    
T  25003865 atattttatatatgtatttt---tataaataattttcttggcttgccacttagttgttcaacaatttat 25003930  T

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Target: scaffold0657 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 5544 - 5460
Alignment:
Q  139 atattttatatacgtattttctttttaaattattttcttgacttgtcacttagttgttcaacaatttattttataagcgagaaactt 225  Q
    |||||||||||| ||||||| ||   |||| |||||||||||||| || || ||||||||  ||||||||||||  |||||||||||    
T  5544 atattttatatatgtattttatta--aaataattttcttgacttgccatttggttgttcattaatttattttatgtgcgagaaactt 5460  T

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