View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_42 (Length: 246)
Name: NF15906_low_42
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 24859843 - 24859630
Alignment:
| Q |
18 |
atttgtgttagtgtgcacaatttacgctgcaagggacgctaggcgtggtcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaacaagt |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |
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| T |
24859843 |
atttgtgttagtgtacacaatttacgctgcaagggacactaggcgtggtcaagtaagttcaaccggaacacttgtaattggtttaattgcaggagcaagt |
24859744 |
T |
|
| Q |
118 |
gtgttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtctatt |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24859743 |
gttttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtctatt |
24859644 |
T |
|
| Q |
218 |
gggttggtcctttg |
231 |
Q |
| |
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|||||||||||||| |
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| T |
24859643 |
gggttggtcctttg |
24859630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 15340893 - 15341106
Alignment:
| Q |
18 |
atttgtgttagtgtgcacaatttacgctgcaagggacgctaggcgtggtcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaacaagt |
117 |
Q |
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||||||||| |||| ||||||||| | ||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |
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| T |
15340893 |
atttgtgttggtgtacacaatttatgatgcaatggacactaggcgtggtcaagtaagttcaacaggaacacttgtaattggtttaatagcaggagcaagt |
15340992 |
T |
|
| Q |
118 |
gtgttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtctatt |
217 |
Q |
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|||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||| |
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| T |
15340993 |
gtgttagcagcaggtccattctctggtgggtgaatcaaccatgcatgtgcttttggttctgcttcaattgatagaacattcaggaatcaagctgtctatt |
15341092 |
T |
|
| Q |
218 |
gggttggtcctttg |
231 |
Q |
| |
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|||||||||||||| |
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| T |
15341093 |
gggttggtcctttg |
15341106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 24918906 - 24919119
Alignment:
| Q |
18 |
atttgtgttagtgtgcacaatttacgctgcaagggacgctaggcgtggtcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaacaagt |
117 |
Q |
| |
|
||||||||| |||| ||||||||| | ||||| |||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| || || |
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| T |
24918906 |
atttgtgtttgtgtacacaatttatgatgcaatggacactaggcgtggtcaagtaagttcaacaggaacacttgttattggtttaatagcaggagcatgt |
24919005 |
T |
|
| Q |
118 |
gtgttagcagcaggtccattctctggcgggtcaatcaaccctgcatgtgcttttggatctgcttccattgccggaacattcagaaatcaagctgtctatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||| ||| |||||||||| |||||||||||||||| |
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| T |
24919006 |
gtgttagcagcaggtccattctctggtgggtgaatcaaccatgcatgtgcttttggttctgcttcttttgttagaacattcaggaatcaagctgtctatt |
24919105 |
T |
|
| Q |
218 |
gggttggtcctttg |
231 |
Q |
| |
|
||||||||| |||| |
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| T |
24919106 |
gggttggtcttttg |
24919119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 66 - 231
Target Start/End: Original strand, 1081811 - 1081976
Alignment:
| Q |
66 |
tcaagtaagttcaaccgaaacacttgtaattggtttaatagcaggaacaagtgtgttagcagcaggtccattctctggcgggtcaatcaaccctgcatgt |
165 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |
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| T |
1081811 |
tcaagtaagttcaacaggaacacttgtaattggtttaatagcaggagcaagtgtgttagcagcaggtccattctctggtgggtgaatcaaccatgcatgt |
1081910 |
T |
|
| Q |
166 |
gcttttggatctgcttccattgccggaacattcagaaatcaagctgtctattgggttggtcctttg |
231 |
Q |
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|||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
1081911 |
gcttttggttctgcttccattgctagaacattcaggaatcaagctgtctattgggttggtcttttg |
1081976 |
T |
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