View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_43 (Length: 244)
Name: NF15906_low_43
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 14214400 - 14214521
Alignment:
| Q |
9 |
gtcgaagaatatgaaagcaataaattgtactcaaaggatattaaaagttacatgatcaaacaattaca-agaactttaatgacctaacctagagaatttt |
107 |
Q |
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| T |
14214400 |
gtcgaataaaatgaaagcaataaattgtattcaaaggatattaaaagttacatgatccaacaattatagagaaccttaatgacctaacctagagaatttg |
14214499 |
T |
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| Q |
108 |
ctactcatgcatcctaaacata |
129 |
Q |
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| T |
14214500 |
ctactcatgcttcctaaacata |
14214521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 14214492 - 14214585
Alignment:
| Q |
129 |
agaattttctactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattccttaacttcc |
222 |
Q |
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| T |
14214492 |
agaatttgctactcatgcttcctaaacataaattgttgaatatgaaaagaaacacataaataaaggttcatcggttgatgattcattgacttcc |
14214585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 963282 - 963353
Alignment:
| Q |
137 |
ctactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatg |
208 |
Q |
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| T |
963282 |
ctactcatactttctaaacataaactattgaatatgaaaagaaaaacataagcaaaagatcattggttgatg |
963353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 7783576 - 7783651
Alignment:
| Q |
137 |
ctactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattc |
212 |
Q |
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| T |
7783576 |
ctactcatgcttcgtaaatataaattattgaatatgaaaaggaaaacataaataaaggatcgtcgattgatgattc |
7783651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 30926687 - 30926759
Alignment:
| Q |
143 |
atgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattcctt |
215 |
Q |
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| T |
30926687 |
atgcttcctaaacataaacaattgaatatgaaaaggaaaagataaataaatgatcacttgttgatgattcctt |
30926759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 26028432 - 26028504
Alignment:
| Q |
143 |
atgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattcctt |
215 |
Q |
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| T |
26028432 |
atgcttgctaaacataaactattgaagatgaaaaggaaaacatagataaatgatcaccggttgatgattcctt |
26028504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 30918397 - 30918446
Alignment:
| Q |
164 |
ttgaatatgaaaagaaaaacataaataaaggttcattggttgatgattcc |
213 |
Q |
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|||||||||||||| |||||||||||||| | ||| ||||||||||||| |
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|
| T |
30918397 |
ttgaatatgaaaaggaaaacataaataaaagatcaccggttgatgattcc |
30918446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 15434615 - 15434671
Alignment:
| Q |
138 |
tactgatgcttcctaaacataaattgttgaatatgaaaagaaaaacataaataaagg |
194 |
Q |
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|||| |||||||||||||||||| | ||| |||||||||| ||||||||||| |||| |
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| T |
15434615 |
tactcatgcttcctaaacataaagtattgcatatgaaaaggaaaacataaatgaagg |
15434671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 11603060 - 11603022
Alignment:
| Q |
39 |
tcaaaggatattaaaagttacatgatcaaacaattacaa |
77 |
Q |
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|||||||||| |||| ||||||||||||||||||||||| |
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| T |
11603060 |
tcaaaggataataaatgttacatgatcaaacaattacaa |
11603022 |
T |
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