View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_45 (Length: 240)
Name: NF15906_low_45
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 7802463 - 7802678
Alignment:
| Q |
17 |
atatttgactatgtatatccggttgcctcttgttggnnnnnnnnnatttgatcagagcctctttttggttttatatcgttnnnnnnntcactctctcctc |
116 |
Q |
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| T |
7802463 |
atatttgactatgtatatccggttgcctcttgttggtttttttt-atttggtcagagcctctttttggttttatatcgttaaaaaaatcactctctcctc |
7802561 |
T |
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| Q |
117 |
catcgaagccattctcatcctcaaccattgnnnnnnngaaagattctcatcctcaaccatggtttggtgcttaa----taagggcttttttaaatttcta |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
7802562 |
catcgaagccattctcatcctcaaccattg-ttttttgaaagattctcatcctcaaccatggtttggtgcttaataagtaaggacttttttaaatttcta |
7802660 |
T |
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| Q |
213 |
ataaccttgccatctgtg |
230 |
Q |
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|||||||||||||||||| |
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| T |
7802661 |
ataaccttgccatctgtg |
7802678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 62 - 230
Target Start/End: Original strand, 7820218 - 7820385
Alignment:
| Q |
62 |
atttgatcagagcctctttttggttttatatcgttnnnnnnntcactctctcctccatcgaagccattctcatcctcaaccattgnnnnnnngaaagatt |
161 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7820218 |
atttggtcagagcctctttttggttttatatcgttaaaaaaatcactctctcctccatcgaagccattctcatcctcaaccatt-attttttgaaagatt |
7820316 |
T |
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| Q |
162 |
ctcatcctcaaccatggtttggtgcttaataagggcttttttaaatttctaataaccttgccatctgtg |
230 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
7820317 |
ctcatcctcaaccatggtttggtgcttaataaaggcttttttaaatttctaataaccttgccatatgtg |
7820385 |
T |
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