View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_5 (Length: 561)
Name: NF15906_low_5
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 29207220 - 29206695
Alignment:
| Q |
18 |
gaataaggtaaggaattacatggtacactaacatgtattactactttgtatgtccatttcatttttcacatttcggtgaatcatttttgtgtttgtttag |
117 |
Q |
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| T |
29207220 |
gaataaggtaaggaattacatggtacactaacatgtattactacttagtatgtccatttcatttttcacatttcggtgaatcatttttgtgtttgtttag |
29207121 |
T |
|
| Q |
118 |
ggttcaagaaaatctcctacaaaagaaaatacaaaaccacaagaattcaaactccacacacaagaaagagctgtcaaacgtgcaatgttcaactatgaag |
217 |
Q |
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| T |
29207120 |
ggttcaagaaaatctcctacaaaagaaaatacaaaaccacaagaattcaaactccacacacaagaaagagctgtcaaacgtgcaatgttcaactatgaag |
29207021 |
T |
|
| Q |
218 |
taagatatatagtgaattatcaatgtccaacatagtattataattttcatttattgatgaatgtggtttttcttaggtgacaacaaaattatatctcatg |
317 |
Q |
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| T |
29207020 |
taagatatatagtgaattatcaatgtccaacatagtattataattttcatttattgatgaatgtggtttttcttaggtgacaacaaaattatatctcatg |
29206921 |
T |
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| Q |
318 |
gagttgcgaaagagacaagaggaaaagttgatgaaggtattaggaacataataattaatcaagatatatgatactaatagtgagagtgagagcaatattt |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29206920 |
gagttgcgaaagagacaagaggagaagttgatgaaggtattaggaacataataattaatcaagatatatgatactaatagtgagagtgagagcaata--t |
29206823 |
T |
|
| Q |
418 |
tttactaattaattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaattgatgccttattttg |
517 |
Q |
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| T |
29206822 |
tttactaattaattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaattgatgccttactttg |
29206723 |
T |
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| Q |
518 |
ataagccattcttcccacaaaggtaaat |
545 |
Q |
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| T |
29206722 |
ataagccattcttcccacaaaggtaaat |
29206695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 100 - 545
Target Start/End: Original strand, 38379049 - 38379499
Alignment:
| Q |
100 |
atttttgtgtttgtttagggttcaagaaaatctcctacaaaagaaaatacaaaaccacaagaattcaaactccacacacaagaaagagctgtcaaacgtg |
199 |
Q |
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|||||| |||||||| ||| |||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
38379049 |
atttttctgtttgttcaggcttcaagaaaatctcctaccaaagaaaatactagaccaaaagaattcaaactccacactcaagaaagagcagtcaaacgtg |
38379148 |
T |
|
| Q |
200 |
caatgttcaactatgaagtaagatat--atagtgaattatcaatgtccaacatagtattataattttcatttattgatgaatgtggtttttcttaggtga |
297 |
Q |
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|||| |||||||| |||||||||||| ||| ||||| || ||||| || ||| | ||||| |||| || | | ||||||||||||| |||||||| |
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| T |
38379149 |
caatattcaactacgaagtaagatatacataatgaatgattaatgtttaagttagcaatataagtttctttgttcggtgaatgtggttttcattaggtga |
38379248 |
T |
|
| Q |
298 |
caacaaaattatatctcatggagttgcgaaagagacaagaggaaaagttgatgaaggta-ttaggaacataataattaatcaagatatatgatactaata |
396 |
Q |
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||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||| |||||||||| || | ||||||||||||||| |
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| T |
38379249 |
caacaaaattatatctcatggagttgcaaaagagacaagaagagaagttgatgaaggtatttaggcacataataatgaa--gatatatatgatactaatt |
38379346 |
T |
|
| Q |
397 |
gtgagagtgagagcaatatttttta----ctaattaattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttcca |
492 |
Q |
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||| | ||||| |||||||| | ||||||||| ||| ||||| |||||||||||||||||||||||||| |||| ||||| || ||||||||| |
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| T |
38379347 |
atgaaaatgagattaatattttagagaagctaattaatgaaatgtggaatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttcca |
38379446 |
T |
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| Q |
493 |
cgagctcaattgatgccttattttgataagccattcttcccacaaaggtaaat |
545 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||| | |||||||| |
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| T |
38379447 |
agagctcaattaatgccttattttgataagccattctccccaaataggtaaat |
38379499 |
T |
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