View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15906_low_50 (Length: 218)
Name: NF15906_low_50
Description: NF15906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15906_low_50 |
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| [»] scaffold0442 (1 HSPs) |
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| [»] scaffold0320 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 7054177 - 7054338
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7054177 |
aacaaacaaaaatggtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
7054276 |
T |
|
| Q |
118 |
cccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatctttcttg |
179 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
7054277 |
cccactatgtggctttgtttctatattgtttgcaccatctcttggtactttgatctttcttg |
7054338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 1702316 - 1702473
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatat--tcatcctcgtactacttggtcttttc |
115 |
Q |
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||||||||||| | |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |||||| |
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| T |
1702316 |
aacaaacaaaactggtaaccattattttgggactattccaaattgtgtgtcataatacttgagcatgtatataatcatccccgctctacttggccttttc |
1702415 |
T |
|
| Q |
116 |
atcccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatct |
173 |
Q |
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|||| |||| ||||||||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
1702416 |
atcctactacgtggctttgtttccatattttttgcaccttctcttggtactttgatct |
1702473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 9990968 - 9991125
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatat--tcatcctcgtactacttggtcttttc |
115 |
Q |
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||||||||||||| ||| ||| |||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| || |||||||| |||||| |
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| T |
9990968 |
aacaaacaaaaatgataatcattattttgggactattccaaattgtttgtcataatacttgagcatgtatataatcatccccgctctacttggccttttc |
9991067 |
T |
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| Q |
116 |
atcccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatct |
173 |
Q |
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|||| |||| ||||||||||||| ||||| |||||||| ||||||||||||||||||| |
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|
| T |
9991068 |
atccaactacgtggctttgtttccatattttttgcaccttctcttggtactttgatct |
9991125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 16613348 - 16613476
Alignment:
| Q |
47 |
ggactgttccaaattgtgtgtcataatacttgagcatgtatat--tcatcctcgtactacttggtcttttcatcccactatgtggctttgtttctatatt |
144 |
Q |
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|
||||| |||||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
16613348 |
ggactattccaaattgtgtgtcataatacttgagaatgtatataatcatccccgcactacttggtcttttcatcctactacgtggctttgtttccatatt |
16613447 |
T |
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| Q |
145 |
atttgcaccatctcttggtactttgatct |
173 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
16613448 |
gcttgcaccttctcttggtactttgatct |
16613476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 12020 - 12181
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
117 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12020 |
aacaaacaaaaatggtaaccataatttatggactgttccaaattgtgtgtaataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
12119 |
T |
|
| Q |
118 |
cccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatctttcttg |
179 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12120 |
ccaactatgtggctttgtttctatattgtttgcaccatctcttggtactttgatctttcttg |
12181 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 38981299 - 38981138
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
117 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38981299 |
aacaaacaaaaatggtaaccattatttatggattgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
38981200 |
T |
|
| Q |
118 |
cccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatctttcttg |
179 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38981199 |
cccactatgcggctttgtttctatattgtttgcaccatctcttggtactttgatctttcttg |
38981138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 24867137 - 24867207
Alignment:
| Q |
100 |
actacttggtcttttcatcccactatgtggctttgtttctatattatttgcaccatctcttggtactttga |
170 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| ||||| |||||||| ||| || || |||||| |
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| T |
24867137 |
actacttggccttttcatcccactatttggctttgttctcatattgtttgcaccttctttttgttctttga |
24867207 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 51425189 - 51425028
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |
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|
| T |
51425189 |
aacaaacaaaaatggtaaccataatttatggacttttccaaattgtgtgtcataatacttgagaatgtatattcatccttgtactacttgatcttttcat |
51425090 |
T |
|
| Q |
118 |
cccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatctttcttg |
179 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
51425089 |
cccactatgtggctttgtttctatattgtttgcaccatctcttggtactttgatctttcttg |
51425028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 9290997 - 9290838
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
9290997 |
aacaaacaaaaatggtaaccataatttatggactgttccaaattatgtgtcataatacttgagcatgtatattcatcctagtactacttgatcttttcat |
9290898 |
T |
|
| Q |
118 |
cccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatctttct |
177 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
9290897 |
cccactatgtggctttgtttctatattgcttgcaccatctcttggtactttgatctttct |
9290838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 8212735 - 8212575
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |
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| T |
8212735 |
aacaaacaaaaatggtaaccataatttatggactgttccaaatcgtgtgtcataatacttaagcatg-atatttatcctcgtactacttggtcttttcat |
8212637 |
T |
|
| Q |
118 |
cccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatctttcttg |
179 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
8212636 |
cccactatgtggctttgtttctatattttttgcaccatctcttggtactttgatatttcttg |
8212575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 13959 - 13798
Alignment:
| Q |
18 |
aacaaacaaaaatagtaaccataatttatggactgttccaaattgtgtgtcataatacttgagcatgtatattcatcctcgtactacttggtcttttcat |
117 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
13959 |
aacaaacaaaaatggtaaccataatttacagactcttccaaattgtgtgtcataatacttccgcatgtatattcattctcgtactactaggtcttttcat |
13860 |
T |
|
| Q |
118 |
cccactatgtggctttgtttctatattatttgcaccatctcttggtactttgatctttcttg |
179 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
13859 |
cccactatgtggctttgtttctatattgtttgcaccatcacttggtactttgatctttcttg |
13798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 24999678 - 24999629
Alignment:
| Q |
124 |
atgtggctttgtttctatattatttgcaccatctcttggtactttgatct |
173 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
24999678 |
atgtggctttatttccatattgtttgcaccttctcttggtactttgatct |
24999629 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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