View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15907_high_9 (Length: 245)
Name: NF15907_high_9
Description: NF15907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15907_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 17972890 - 17972674
Alignment:
| Q |
16 |
atgaaactgggaagtagaatttcgcatactgtttagacatatggtacaatcgggaagaataaaaatggcattttcttagtagtttgggattgattgattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17972890 |
atgaaactgggaagtagaatttcgcatactgtttagacatatggtacaattgggaagaataaaaatggcattttcttagtagtttgggaatgattgattg |
17972791 |
T |
|
| Q |
116 |
aaaaaaccaaggatcatnnnnnnnctaaaatgacaggtgtgcttctacacgaaccaaattgtaacaaaatctgttcttcaaatgtgcacatagtcacaga |
215 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17972790 |
aaaaaaccaaggatcataaaaaaactaaaatgataggtgtgcttctacacgaaccaaattgtaacaaaatctattcttcaaatgtgcacatagtcacaga |
17972691 |
T |
|
| Q |
216 |
taaagctaaaaggaagt |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17972690 |
taaagctaaaaggaagt |
17972674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 3076161 - 3075945
Alignment:
| Q |
16 |
atgaaactgggaagtagaatttcgcatactgtttagacatatggtacaatcgggaagaataaaaatggcattttcttagtagtttgggattgattgattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3076161 |
atgaaactgggaagtagaatttcgcatactgtttagacatatggtacaattgggaagaataaaaatggcattttcttagtagtttgggaatgattgattg |
3076062 |
T |
|
| Q |
116 |
aaaaaaccaaggatcatnnnnnnnctaaaatgacaggtgtgcttctacacgaaccaaattgtaacaaaatctgttcttcaaatgtgcacatagtcacaga |
215 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3076061 |
aaaaaaccaaggatcataaaaaaactaaaatgataggtgtgcttctacacgaaccaaattgtaacaaaatctattcttcaaatgtgcacatagtcacaga |
3075962 |
T |
|
| Q |
216 |
taaagctaaaaggaagt |
232 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3075961 |
taaagctaaaaggaagt |
3075945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University