View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15907_low_1 (Length: 488)
Name: NF15907_low_1
Description: NF15907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15907_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 488
Target Start/End: Complemental strand, 35094570 - 35094090
Alignment:
| Q |
8 |
catcatcaaataataatacagacgagggttcggtaagatcacgcgcaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgaggga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094570 |
catcatcaaataataatacagacgagggttcggtaagatcacgcacaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgaggga |
35094471 |
T |
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| Q |
108 |
agaagtatcagcacaatctgatttgcaagatcttttgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttg |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094470 |
agaagtatcagcacaatttgatttgcaagatcttttgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttg |
35094371 |
T |
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| Q |
208 |
actggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35094370 |
actggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatc |
35094271 |
T |
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| Q |
308 |
cgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcccgg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35094270 |
cgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacgg |
35094171 |
T |
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| Q |
408 |
tattttcattttcacttccactactaaacatcatagaatataagtttaatatttttcgcaccttttcctcttacaatttcc |
488 |
Q |
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| T |
35094170 |
tattttcattttcacttcaactaataaacatcagagaatataagtttaatatttttcgcaccttttccttttacaatttcc |
35094090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 42509285 - 42509397
Alignment:
| Q |
264 |
agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc |
363 |
Q |
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||||||||||||||| |||||||| | ||||||||||| ||||| ||| | ||||||| || |||||||| || | || ||| ||||| || || | |
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| T |
42509285 |
agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt |
42509384 |
T |
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| Q |
364 |
accgactttgttc |
376 |
Q |
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| T |
42509385 |
accgactttgttc |
42509397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 47364879 - 47364827
Alignment:
| Q |
410 |
ttttcattttcacttccactactaaacatcatagaatataagtttaatatttt |
462 |
Q |
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|||||||||||||||| |||| ||||||| | |||| |||| ||||||||||| |
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| T |
47364879 |
ttttcattttcacttcaactaataaacataaaagaaaataaatttaatatttt |
47364827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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