View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15907_low_12 (Length: 243)
Name: NF15907_low_12
Description: NF15907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15907_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 35093863 - 35094099
Alignment:
| Q |
7 |
gcaactccttgtatagatattcaatccctttcgctacacctttcactatcttcaacctgcttggccagtcaaggctttcctgtcctatagaatggtatcc |
106 |
Q |
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| T |
35093863 |
gcaactccttgtatagatattcaatccctttcgctacacctttcactatcttcaacctgcttggccagtcaaggctttcctgtcctatagaatggtatcc |
35093962 |
T |
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| Q |
107 |
tgtattagatgtaaaagttagttacactagttagttgctctcattgcctatataagtcttattagttgtaaaaggaaaaaagtgaggaaaatatacaata |
206 |
Q |
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| T |
35093963 |
tgtattagatgtaaaagttagttacactagttagttgctctcattgcctatataagtcttattagttgtaaaaggaaaaatgtgaggaaaatatacaata |
35094062 |
T |
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| Q |
207 |
cattttttaacatttagatcttttttcggaaattgta |
243 |
Q |
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| T |
35094063 |
cattttttaacatttagatcttttttcggaaattgta |
35094099 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 34239714 - 34239772
Alignment:
| Q |
111 |
ttagatgtaaaagttagttacactagttagttgctctcattgcctatataagtcttatt |
169 |
Q |
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| T |
34239714 |
ttagatgtaaaagttagttacacaagttagttgttctaatcggctatataagtcttatt |
34239772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 40563 - 40620
Alignment:
| Q |
112 |
tagatgtaaaagttagttacactagttagttgctctcattgcctatataagtcttatt |
169 |
Q |
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| T |
40563 |
tagatgtaaaagtaagttacactagttagttaatctaattgactatataagccttatt |
40620 |
T |
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