View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15907_low_2 (Length: 463)
Name: NF15907_low_2
Description: NF15907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15907_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 222 - 447
Target Start/End: Complemental strand, 32764437 - 32764212
Alignment:
| Q |
222 |
tatattattttgtgtgtggtagggaagtagtacaagaatacaataaagagatgttaagggtgacagacaatattttggagcttttgtctgaaggactaga |
321 |
Q |
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| T |
32764437 |
tatattattttgtgtgtggtagggaagtagtacaagaatacaataaagagatgttaagggtgacagacaatattttggagcttttgtctgaaggactaga |
32764338 |
T |
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| Q |
322 |
attggagagtaagactttgaagtcttgtttgggaggtgaagaaatagaattagaaatgaagataaatatgtatccaccatgtccacaacctgaattggca |
421 |
Q |
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| T |
32764337 |
attggagagtaagactttgaagtcttgtttgggaggtgaagaaatagaattagaaatgaagataaatatgtatccaccatgtccacaacctgaattggca |
32764238 |
T |
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| Q |
422 |
ttaggagttgagccccatactgatat |
447 |
Q |
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| T |
32764237 |
ttaggagttgagccccatactgatat |
32764212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 32764653 - 32764485
Alignment:
| Q |
5 |
gtgggtagattattcttttcatctcatgtctcctcattctaaggtgaattttgagatgtggcccaaaagtcctccttcgtacaggtttgtacttacattg |
104 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32764653 |
gtgggttgattattattttcatctcatgtctcctcattctaagttgaattttgagatgtggcccaaaagtcctccttcgtacaggtttgtacttacattg |
32764554 |
T |
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| Q |
105 |
agcacgtttgttacaacnnnnnnnnnnngtgacaaaatcatccgtttgttacatattgatttttcattac |
174 |
Q |
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| T |
32764553 |
agcacgtttgttacaac-ttttttttttgtgacaaaatcatccgtttgttacatattgatttttcattac |
32764485 |
T |
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