View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15907_low_3 (Length: 382)
Name: NF15907_low_3
Description: NF15907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15907_low_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 107 - 382
Target Start/End: Complemental strand, 33897453 - 33897180
Alignment:
| Q |
107 |
ggttgtttaaacacaacaaagtatcggcattaagtctgatggagtatcgtggtgtgagtaacaaatcttgtattagatatagaaatgttagtgttcaaag |
206 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| |
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| T |
33897453 |
ggttgtttaaacaaaacaaagtatcggcattaagtctgatggactatcgtggtgtgagtaacaaatcttgtattagata--gaaatgttagggttgaaag |
33897356 |
T |
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| Q |
207 |
taacacgccccaacaaagccaccaccttagtatataatatttccagcagctcttcgctctaataaatttggctaattcttgaaggtggtggaaaagctta |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33897355 |
taacacgccccaacaaagccaccaccttagtatataatatttccaacagctcttcgctctaataaatttggctaattcttgaaggtggtggaaaggctta |
33897256 |
T |
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| Q |
307 |
tcatcattagataggtgggcaatgggaatatataattccaggttttggagagatacttggataggtgattcatcgt |
382 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33897255 |
tcatccttagataggtgggcaatgggaatatataattccaggttttggagagatacttggataggtgattcatcgt |
33897180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33898799 - 33898687
Alignment:
| Q |
1 |
tttaaatacttaagttagagtttgaatttttacggggcaaat-acccccttgtacttttcccaagttatgggttaagtattctttgtacttctcttattt |
99 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
33898799 |
tttaaatacttaagttagagtttgattttttacggggtaaattacccccttatacttttcccaaattatgagttaagtattctttgtacttctcttattt |
33898700 |
T |
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| Q |
100 |
ctaatttggttgt |
112 |
Q |
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||||||||||||| |
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| T |
33898699 |
ctaatttggttgt |
33898687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 45871416 - 45871367
Alignment:
| Q |
46 |
cccttgtacttttcccaagttatgggttaagtattctttgtacttctctt |
95 |
Q |
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| T |
45871416 |
cccttgtatttttcctgagttatgggttaagtattctttgtacttttctt |
45871367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26529081 - 26529183
Alignment:
| Q |
1 |
tttaaatacttaagttagagtttgaatttttacggggcaaatacccccttgtacttttcccaagttatgggttaagtattctttgtacttctcttatttc |
100 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||| | ||||| ||||||| | || ||||||||||||||||||||||||||| |||| |
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| T |
26529081 |
tttaaatacttaagttagagtttgattttttaaggggcaaata-tctcttgtcattttcccgaattgtgggttaagtattctttgtacttctctcttttc |
26529179 |
T |
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| Q |
101 |
taat |
104 |
Q |
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|||| |
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| T |
26529180 |
taat |
26529183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5830750 - 5830644
Alignment:
| Q |
1 |
tttaaatacttaagttagagtttgaatttttacggggcaaatacccccttgtacttttcccaagttatgggttaagtat----tctttgtacttctctta |
96 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |||||| |||| |||||||| |||| ||||||||||| ||||||||||||||| | |
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| T |
5830750 |
tttaaatacttaagttagagtttatttttttaaggggcaagtacccc-ttgttcttttcccgagttgtgggttaagtaagtactctttgtacttctctca |
5830652 |
T |
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| Q |
97 |
tttctaat |
104 |
Q |
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|||||||| |
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| T |
5830651 |
tttctaat |
5830644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19403644 - 19403717
Alignment:
| Q |
1 |
tttaaatacttaagttagagtttgaatttttacggggcaaatacccccttgtacttttcccaagttatgggttaa |
75 |
Q |
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|||||||||||||||||||| ||| ||||| ||||||| || || ||| |||||||||| ||||||||||||| |
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| T |
19403644 |
tttaaatacttaagttagaggttggttttttttggggcaagta-cctcttatacttttcccgagttatgggttaa |
19403717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9164811 - 9164909
Alignment:
| Q |
1 |
tttaaatacttaagttagagtttgaatttttacggggcaaatacccccttgtacttttcccaagttatgggttaagtattctttgtacttctcttatttc |
100 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||| | | ||||||||||| | | || | ||||| ||| ||||| ||||||||| ||||| |
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| T |
9164811 |
tttaaatacttaagtttgagtttgattttttacggggcaaata-cactttgtacttttctcgaattgtaggttatgtactctttatacttctctcatttc |
9164909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 10100369 - 10100280
Alignment:
| Q |
1 |
tttaaatacttaagttagagtttgaatttttac-ggggcaaatacccccttgtacttttcccaagttatgggttaagtattctttgtactt |
90 |
Q |
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|||||||||||||||||||||||| |||| || |||||||||| ||||||||||| ||||| | || | ||||||||| ||| ||||||| |
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| T |
10100369 |
tttaaatacttaagttagagtttggtttttaactggggcaaata-ccccttgtactattccctacttgtcggttaagtactctgtgtactt |
10100280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 31427536 - 31427437
Alignment:
| Q |
4 |
aaatacttaagttagagtttgaatttttacggggcaaatacccccttgtacttttcccaagttatgggttaagtattctttgtacttctcttatttctaa |
103 |
Q |
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|||| |||||||||||| ||| | |||| |||||||| ||| || |||||||||| ||||||| ||||| ||||| ||||| || ||||| |||||||| |
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| T |
31427536 |
aaatgcttaagttagaggttggaattttgcggggcaagtactcc-ttgtactttttccaagttgtgggtgaagtactctttctatttctcccatttctaa |
31427438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3347805 - 3347761
Alignment:
| Q |
1 |
tttaaatacttaagttagagtttgaatttttacggggcaaatacc |
45 |
Q |
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|||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
3347805 |
tttaaatatttaagttagagtttgaatttttctgggacaaatacc |
3347761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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