View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15907_low_5 (Length: 316)
Name: NF15907_low_5
Description: NF15907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15907_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 25298710 - 25299001
Alignment:
| Q |
1 |
tctcattgtccaaattcactaagctttaactaggtttaatgtcgtcaaatacccacttcttcttcaataaaatcaatgaagaatcggctgaacctttttc |
100 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25298710 |
tctcattgtccaaattcactaagctttgattaggtttaatgtcgtcaaatacccacttcttcttcaataaaatcaatgaagaatcggctgaacctttttc |
25298809 |
T |
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| Q |
101 |
gacatttatagtgctcgactaagcttcctttgaatgagaagaaacttgcctacctttaaatctcctacttgcagacttcggctaacaagatgattatttt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||| |
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| T |
25298810 |
gacatttatagtgctcgactaagctttctttgaatgagaagaaacttgtctacctttaaatctcctacttgctgatttcggctgacaagatgattatttt |
25298909 |
T |
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| Q |
201 |
taggtgtaagcaaaggaaaatgattttaaagctaaatcatattaaca-tcttttatacttcaggtatacaaaggaaaatctcttacttatat |
291 |
Q |
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| T |
25298910 |
tcgatgtaagcaaaggaaaatgattttaaagctaaatcatattaacactcttttagacttcaggtatacaaagggaaatctcttacttatat |
25299001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 12919520 - 12919552
Alignment:
| Q |
177 |
ttcggctaacaagatgattatttttaggtgtaa |
209 |
Q |
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| T |
12919520 |
ttcggctaacaagataattatttttaggtgtaa |
12919552 |
T |
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