View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15907_low_9 (Length: 276)

Name: NF15907_low_9
Description: NF15907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15907_low_9
NF15907_low_9
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-268)||(304507-304780)
[»] chr5 (1 HSPs)
chr5 (9-268)||(20071848-20072120)
[»] chr4 (3 HSPs)
chr4 (123-216)||(33073379-33073479)
chr4 (212-267)||(33073488-33073543)
chr4 (14-50)||(33073311-33073347)
[»] chr6 (1 HSPs)
chr6 (12-64)||(25057278-25057330)
[»] chr3 (6 HSPs)
chr3 (123-216)||(36984664-36984764)
chr3 (123-216)||(37010103-37010203)
chr3 (210-268)||(36984599-36984657)
chr3 (210-268)||(37010038-37010096)
chr3 (14-50)||(36984796-36984832)
chr3 (14-50)||(37010235-37010271)


Alignment Details
Target: scaffold0003 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 304780 - 304507
Alignment:
Q  1 cttcgaataacacaatacaatgaaggatgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctacttttgcaaccactaccaccaagttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  304780 cttcgaataacacaatacaatgaaggatgtttttggaaatgttgcaaaaacatgaacagtcctttatcatctactcttgcaaccacaaccaccgagttga 304681  T
Q  101 ctcactgtannnnnnnataacctgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttactttgtcca 200  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  304680 ctcactgtattttttaataacctgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttactttgtcca 304581  T
Q  201 aactttcaaaattaac-ctcaccattaccct-----ccagattcaaactaatctccttcaatctcgttcttctc 268  Q
    ||||||||||||||||   ||  |||| |||      ||||| |||||||||||||||||||||||||||||||    
T  304580 aactttcaaaattaacaaccaaaattaaccttaccatcagatccaaactaatctccttcaatctcgttcttctc 304507  T

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Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 268
Target Start/End: Complemental strand, 20072120 - 20071848
Alignment:
Q  9 aacacaatacaatgaaggatgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctacttttgcaaccactaccaccaagttgactcactgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||||| |    
T  20072120 aacacaatacaatgaaggatgtttttggaaatgttgcaaaaatatgaacagtcctttatcatctactcttgcgaccacaaccaccgagttgactcactat 20072021  T
Q  109 annnnnnnataacctgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttactttgtccaaactttca 208  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20072020 attttttaataacctgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctacttattttgtccaaactttca 20071921  T
Q  209 aaat-------------taacctcaccattaccctccagattcaaactaatctccttcaatctcgttcttctc 268  Q
    ||||             |||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  20071920 aaattaacaaccaaaattaaccttaccattaccctccagatccaaactaatatccttcaatctcgttcttctc 20071848  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 216
Target Start/End: Original strand, 33073379 - 33073479
Alignment:
Q  123 tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt 213  Q
    ||||||||||||||||| ||  | ||||| |||||||||| ||||||| |||||||||||||||||         |||||||||||||||||||||||||    
T  33073379 tgagttgactcaaattagca--accaaaatcatctctttcctttctcagagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt 33073476  T
Q  214 aac 216  Q
    |||    
T  33073477 aac 33073479  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 33073488 - 33073543
Alignment:
Q  212 ttaacctcaccattaccctccagattcaaactaatctccttcaatctcgttcttct 267  Q
    ||||||||||||| |||||| | || |||| || ||||||||||||||||||||||    
T  33073488 ttaacctcaccatcaccctctaaatccaaattattctccttcaatctcgttcttct 33073543  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 33073311 - 33073347
Alignment:
Q  14 aatacaatgaaggatgtttttggaaatgttgcaaaaa 50  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  33073311 aatacaatgaagggtgttttgggaaatgttgcaaaaa 33073347  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 25057330 - 25057278
Alignment:
Q  12 acaatacaatgaaggatgtttttggaaatgttgcaaaaatatgaacagtcctt 64  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||| |||||    
T  25057330 acaatacaatgaagggtgtttttggaaatgtgacaaaaatatgaacaatcctt 25057278  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 36984764 - 36984664
Alignment:
Q  123 tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt 213  Q
    ||||||||||||||||| ||  ||||||| ||||| |||| ||||||  |||||||||||||||||         |||||||||||||||||||||||||    
T  36984764 tgagttgactcaaattagca--atcaaaatcatctttttcctttctcggagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt 36984667  T
Q  214 aac 216  Q
    |||    
T  36984666 aac 36984664  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 37010203 - 37010103
Alignment:
Q  123 tgagttgactcaaattaacacaatcaaaaccatctctttcttttctcaaagatattgaatctctac---------ttactttgtccaaactttcaaaatt 213  Q
    ||||||||||||||||| ||  ||||||| ||||| |||| ||||||  |||||||||||||||||         |||||||||||||||||||||||||    
T  37010203 tgagttgactcaaattagca--atcaaaatcatctttttcctttctcggagatattgaatctctaccccttcatgttactttgtccaaactttcaaaatt 37010106  T
Q  214 aac 216  Q
    |||    
T  37010105 aac 37010103  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 36984657 - 36984599
Alignment:
Q  210 aattaacctcaccattaccctccagattcaaactaatctccttcaatctcgttcttctc 268  Q
    ||||||||||||||| |||||| | || |||| || |||||||||||||| ||||||||    
T  36984657 aattaacctcaccatcaccctctaaatccaaattattctccttcaatctcattcttctc 36984599  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 37010096 - 37010038
Alignment:
Q  210 aattaacctcaccattaccctccagattcaaactaatctccttcaatctcgttcttctc 268  Q
    ||||||||||||||| |||||| | || |||| || |||||||||||||| ||||||||    
T  37010096 aattaacctcaccatcaccctctaaatccaaattattctccttcaatctcattcttctc 37010038  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 36984832 - 36984796
Alignment:
Q  14 aatacaatgaaggatgtttttggaaatgttgcaaaaa 50  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  36984832 aatacaatgaagggtgttttgggaaatgttgcaaaaa 36984796  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 37010271 - 37010235
Alignment:
Q  14 aatacaatgaaggatgtttttggaaatgttgcaaaaa 50  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  37010271 aatacaatgaagggtgttttgggaaatgttgcaaaaa 37010235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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