View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15908_high_13 (Length: 425)
Name: NF15908_high_13
Description: NF15908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15908_high_13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 142 - 425
Target Start/End: Complemental strand, 40834450 - 40834146
Alignment:
| Q |
142 |
cttggtaaatttgaataaggatggattttgttgagaattgaattgacgtgtagtctataatggcaagaccgttgtgttgtgtctggttttagttgtgttg |
241 |
Q |
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| T |
40834450 |
cttggtaaatttgaataaggatggatgttgttgagaattgaattgacgtgtagtctataatggcaagaccgttgtgttgtgtctggttttagttgtgttg |
40834351 |
T |
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| Q |
242 |
catttaatggatttatctaatgttatcagtactgtacaactaggtggtccatgcatgctttgatt-aatttttctgttggaattgaagg----------- |
329 |
Q |
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| T |
40834350 |
catttaatggatttatctaatgttatcagtactgtacaactaggtggtccatgcatgctttgattaaatttttctgttggaattgaaggtggtcccatgg |
40834251 |
T |
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| Q |
330 |
---------tggggtttagggtatcctctcttgaggatgatgtctatctttgttagtttactattatgcatttaatatgaacgagtatcatagggggacc |
420 |
Q |
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| T |
40834250 |
tgatccttatggggtttagggtatcctctcttgaggatgatgtctatctttgttagtttactattatgcatttaatatgaacgagtatcatagggggacc |
40834151 |
T |
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| Q |
421 |
agagt |
425 |
Q |
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| T |
40834150 |
agagt |
40834146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 40834569 - 40834516
Alignment:
| Q |
9 |
agtagcataggcttgaataattaattgtatggttagacatatcctcatcattat |
62 |
Q |
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| T |
40834569 |
agtaacataggcttgaataattaattgtatggttagacatatcctcatcattat |
40834516 |
T |
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